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AnnotationForge is an R/Bioconductor package that provides tools for building SQLite-based annotation data packages.

See https://bioconductor.org/packages/AnnotationForge for more information including how to install the release version of the package (please refrain from installing directly from GitHub).

This version of AnnotationForge has a custom makeOrgPackageFromNCBI() function that works with plants.ensembl.org. This will break compatibility with regular ensembl!

TODO:

  • Add variable to choose wich ensembl server to use (try to preserve compatiblity with both ensembl databases.)

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Tools for building SQLite-based annotation data packages

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