Python codes for paper: Systematic pan-cancer analysis of mutation-treatment interactions using large real-world clinico-genomics data.
The findings from our study are visualized in www.precision-cancer.org.
In main.ipynb, we present our codes to analyze
- Association between mutations and patient survival.
- Gene-treatment interactions.
- Mutation-mutation interactions.
The synthetic data used as an illustration are provided in synthetic_data.csv. The detailed descriptions are included in the notebook main.ipynb.