Rule-based modeling framework
A general-purpose, stochastic, biochemical reaction simulator for large reaction networks
RNM to RBM translation project.
A simple CLI for BioNetGen
PTempEst: Parallel Tempering for Estimation
Repository for supplemental materials of published papers related to RuleWorld projects.
Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.
Rule-Based Modeling and Simulation Gui
A repository of rule-based models. Could this be the start of something great?
A tool for graphical construction and visualization of BioNetGen graphs
An application for fitting BioNetGen models using a genetic algorithm
Testing files for atomizer
A C interface for the NFSim API
A database portal for rule-based models