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RuleWorld

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  1. bionetgen bionetgen Public

    Rule-based modeling framework

    Perl 64 25

  2. BNGTutorial BNGTutorial Public

    Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.

    15 3

  3. nfsim nfsim Public

    Forked from msneddon/nfsim

    A general-purpose, stochastic, biochemical reaction simulator for large reaction networks

    C++ 14 9

  4. rulebender rulebender Public

    Rule-Based Modeling and Simulation Gui

    C 12 7

  5. ptempest ptempest Public

    PTempEst: Parallel Tempering for Estimation

    MATLAB 5 4

  6. PyBioNetGen PyBioNetGen Public

    A simple CLI for BioNetGen

    Python 5 4

Repositories

Showing 10 of 23 repositories
  • webng Public Forked from ASinanSaglam/webng

    A set of tools to simplify the weighted ensemble sampling of BioNetGen rule-based simulations.

    RuleWorld/webng’s past year of commit activity
    Jupyter Notebook 0 4 2 0 Updated Apr 29, 2025
  • PyBioNetGen Public

    A simple CLI for BioNetGen

    RuleWorld/PyBioNetGen’s past year of commit activity
    Python 5 MIT 4 11 0 Updated Apr 24, 2025
  • bionetgen Public

    Rule-based modeling framework

    RuleWorld/bionetgen’s past year of commit activity
    Perl 64 MIT 25 66 3 Updated Apr 23, 2025
  • nfsim Public Forked from msneddon/nfsim

    A general-purpose, stochastic, biochemical reaction simulator for large reaction networks

    RuleWorld/nfsim’s past year of commit activity
    C++ 14 MIT 18 15 1 Updated Apr 23, 2025
  • BNGTutorial Public

    Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.

    RuleWorld/BNGTutorial’s past year of commit activity
    15 3 0 0 Updated May 30, 2023
  • BNG_vscode_extension Public
    RuleWorld/BNG_vscode_extension’s past year of commit activity
    JavaScript 4 MIT 2 6 0 Updated Apr 20, 2023
  • atomizer Public

    RNM to RBM translation project.

    RuleWorld/atomizer’s past year of commit activity
    Python 3 5 2 7 Updated Jul 6, 2022
  • RuleHub Public

    A repository of rule-based models. Could this be the start of something great?

    RuleWorld/RuleHub’s past year of commit activity
    Python 1 MIT 3 0 0 Updated Sep 19, 2021
  • ptempest Public

    PTempEst: Parallel Tempering for Estimation

    RuleWorld/ptempest’s past year of commit activity
    MATLAB 5 GPL-3.0 4 0 0 Updated Oct 27, 2020
  • SupplementalMaterials Public

    Repository for supplemental materials of published papers related to RuleWorld projects.

    RuleWorld/SupplementalMaterials’s past year of commit activity
    MATLAB 0 0 0 0 Updated Aug 5, 2020
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