| Model name | Description |
|---|---|
| Dolan2015 | Stochastic model of DNA damage repair by non-homologous end joining and of gamma irradiation-induced cellular senescence. |
| Faeder2003 | Model of early events in FcεRI signaling, including Lyn recruitment and Syk activation. |
| Mitra2019 | Suite of benchmark parameter fitting problems for PyBioNetFit |
| Thomas2016 | Parameter fitting problems published with BioNetFit v1.0 |
| Salazar-Cavazos2019 | Model of EGFR signaling fit to Single Molecule Pull-down (SiMPull) data |
| Model name | Description |
|---|---|
| Hlavacek2018Egg | Benchmark parameter fitting problem consisting of a simple egg-shaped curve. |
| Hlavacek2018Elephant | Benchmark parameter fitting problem consisting of an elephant-shaped curve. |
| Mitra2019Likelihood | Model of IgE-mediated degranulation configured to demonstrate performing Bayesian uncertainty quantification with qualitative data in PyBioNetFit. |
| Mitra2019Rab | Model of Rab5 and Rab7 activation |
For instructions on adding new models to the repo, see AddingModels.md.