Seg3D v2.5.1

Seg3D is a free volume segmentation and processing tool developed by the NIH Center for Integrative Biomedical Computing at the University of Utah Scientific Computing and Imaging (SCI) Institute. Seg3D combines a flexible manual segmentation interface with powerful higher-dimensional image processing and segmentation algorithms from the Insight Toolkit. Users can explore and label image volumes using volume rendering and orthogonal slice view windows. Visit www.seg3d.org for more information.

This release contains bug fixes, an upgrade to ITK 5.2.0, a new grow cut tool, support for large datasets on Windows, and support for newer OSX and Windows 10 versions.

Seg3D v2.5.0

Seg3D is a free volume segmentation and processing tool developed by the NIH Center for Integrative Biomedical Computing at the University of Utah Scientific Computing and Imaging (SCI) Institute. Seg3D combines a flexible manual segmentation interface with powerful higher-dimensional image processing and segmentation algorithms from the Insight Toolkit. Users can explore and label image volumes using volume rendering and orthogonal slice view windows. Visit www.seg3d.org for more information.

This release contains bug fixes, an upgrade to Eigen, an STL writer for Windows, the ability to change threshold color, a faster implicit model tool using parallel algorithms, and a viewer fix for OSX 10.14 and newer.

Seg3D v2.4.4

Seg3D is a free volume segmentation and processing tool developed by the NIH Center for Integrative Biomedical Computing at the University of Utah Scientific Computing and Imaging (SCI) Institute. Seg3D combines a flexible manual segmentation interface with powerful higher-dimensional image processing and segmentation algorithms from the Insight Toolkit. Users can explore and label image volumes using volume rendering and orthogonal slice view windows. Visit www.seg3d.org for more information.

This release contains bug fixes, an upgrade to ITK 4.13.1, an option to build only manual segmentation tools, an option to build Seg3D as a static library (Windows only), and python scripts can be called from the command line.

iBBM 2018

Seg3D is a free volume segmentation and processing tool developed by the NIH Center for Integrative Biomedical Computing at the University of Utah Scientific Computing and Imaging (SCI) Institute. Seg3D combines a flexible manual segmentation interface with powerful higher-dimensional image processing and segmentation algorithms from the Insight Toolkit. Users can explore and label image volumes using volume rendering and orthogonal slice view windows. Visit www.seg3d.org for more information.

This release contains bug fixes, more reliable importers/exporters, and updates to filters and tools.

Seg3D v2.4.2

Seg3D is a free volume segmentation and processing tool developed by the NIH Center for Integrative Biomedical Computing at the University of Utah Scientific Computing and Imaging (SCI) Institute. Seg3D combines a flexible manual segmentation interface with powerful higher-dimensional image processing and segmentation algorithms from the Insight Toolkit. Users can explore and label image volumes using volume rendering and orthogonal slice view windows. Visit www.seg3d.org for more information.

The release contains bug fixes and upgrades ITK to 4.13. Additional running modes were added as Command Line parameters, allowing Seg3D to run in headless mode or run a python script on startup.

IBBM 2017

Fixes bug in implicit model tool

Seg3D v2.4.0

Seg3D is a free volume segmentation and processing tool developed by the NIH Center for Integrative Biomedical Computing at the University of Utah Scientific Computing and Imaging (SCI) Institute. Seg3D combines a flexible manual segmentation interface with powerful higher-dimensional image processing and segmentation algorithms from the Insight Toolkit. Users can explore and label image volumes using volume rendering and orthogonal slice view windows. Visit www.seg3d.org for more information.

The release contains the GUI upgrade to Qt 5, bug fixes and updates to filters and tools.

Seg3D v2.4.0 RC5

Issues closed:
#85: Curvature AnisoDiff Filter Error
#168: Curvature AnisioDiff Filter Mutilates/evicerates input data

Number of bins to be ignored in the Histogram Equalization filter has been increased. Also, using help() in the Python interpreter no longer causes interpreter to hang.

Seg3D v2.4.0 RC4

ITK upgrade complete.

Issues closed:

#35 Upgrade ITK
#139 Check ITK internal PNG library version on upgrade
#172 NIfTI file export failing for masks

Seg3D v2.4.0 RC3

Implicit Model (formerly RBF) tool upgrade.