NOTE: tracklib has been refactored into a collection of libraries hosted here

This is a library for downstream analysis of single particle tracking data.

For installation with pip:

$ pip install git+https://github.com/SGrosse-Holz/tracklib

Comprehensive documentation is available, but currently not web-hosted. Refer to doc/sphinx/build/html/index.html (update with make doc from the root dir)

If you use this library, please cite our original paper¹. The looping inference approach presented therein (Bayesian Inference of Loop Dynamics; BILD) is implemented in the tracklib.analysis.bild module.

Footnotes

1. Gabriele, Brandão, Grosse-Holz, et al., Dynamics of CTCF and cohesin mediated chromatin looping revealed by live-cell imaging, bioRχiv 2021; DOI ↩