Merge pull request #322 from SNEWS2/JostMigenda/ModelNotebookTests

Run Jupyter notebooks in CI

.github/workflows/integration.yml

@@ -38,3 +38,11 @@ jobs:
         run: |
           python -m unittest python/snewpy/test/simplerate_integrationtest.py
           pytest -m 'snowglobes'
+      - name: Run Jupyter notebooks
+        run: |
+          pip install nbclient ipykernel
+          jupyter kernelspec list
+          cd doc/nb/
+          jupyter execute ccsn/*.ipynb
+          jupyter execute presn/*.ipynb
+          jupyter execute AnalyticFluence.ipynb FlavorTransformation.ipynb

.gitignore

@@ -9,13 +9,15 @@ dist/
 # default directory for downloaded model files
 SNEWPY_models/
 
-# snewpy.snowglobes output files
+## SNEWPY output files
+# snewpy.snowglobes intermediate results
 *_SNOprocessed.tar.gz
 *.npy
 *.npz
-
 # used for integration tests in test_snowglobes.py
 fluence_Bollig_2016_s*
+# plots generated by FlavorTransformation.ipynb
+doc/nb/*_adiabaticmsw*.pdf
 
 # editor-specific
 .ipynb_checkpoints/

doc/nb/FlavorTransformation.ipynb

@@ -244,9 +244,11 @@
    "outputs": [],
    "source": [
     "fig = plot_total_flux(model, AdiabaticMSW(), AdiabaticMSW(mh=MassHierarchy.INVERTED) )\n",
-    "fig.savefig('flux_adiabaticmsw.pdf')\n",
+    "fig.show()\n",
+    "# fig.savefig('flux_adiabaticmsw.pdf')\n",
     "fig = plot_spectra(model, AdiabaticMSW(), AdiabaticMSW(mh=MassHierarchy.INVERTED), 100*u.ms)\n",
-    "fig.savefig('spectra_adiabaticmsw.pdf')"
+    "fig.show()\n",
+    "# fig.savefig('spectra_adiabaticmsw.pdf')"
    ]
   },
   {
@@ -264,9 +266,11 @@
     "xf_imo = AdiabaticMSWes(angles_imo)\n",
     "\n",
     "fig = plot_total_flux(model, xf_nmo, xf_imo)\n",
-    "fig.savefig('flux_adiabaticmswes.pdf')\n",
+    "fig.show()\n",
+    "# fig.savefig('flux_adiabaticmswes.pdf')\n",
     "fig = plot_spectra(model, xf_nmo, xf_imo, 100*u.ms)\n",
-    "fig.savefig('spectra_adiabaticmswes.pdf')"
+    "fig.show()\n",
+    "# fig.savefig('spectra_adiabaticmswes.pdf')"
    ]
   }
  ],
@@ -286,7 +290,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.9.5"
+   "version": "3.12.3"
   },
   "vscode": {
    "interpreter": {