Code for ISI image acquisition, stimulus presentation, and mouse visual area segmentation.
Imager & Stimulator Programs
Imager.zip contains files for image acquisition, written by Dario Ringach and Ian Nauhaus. Stimulator.zip contains files for running a visual stimulus during data acquisition.
For complete documentation on installing and using this code, see https://sites.google.com/site/iannauhaus/home/matlab-code
Visual Area Segmentation
At the command line, use "getAreaBorders." Add the other files to your path for complete usage.
About
For more information, see Juavinett, Nauhaus, Garrett, Zhuang, & Callaway (2017) Automated identification of mouse visual areas with intrinsic signal imaging. Nature Protocols. http://www.nature.com/nprot/journal/v12/n1/abs/nprot.2016.158.html