Skip to content

Popular repositories Loading

  1. Stereopy Stereopy Public

    A toolkit of spatial transcriptomic analysis.

    Jupyter Notebook 179 59

  2. SAW SAW Public

    HTML 123 32

  3. CellBin CellBin Public

    Tools for generating single-cell gene expression data

    Python 26 2

  4. StereoMMv1 StereoMMv1 Public

    StereoMM is a graph fusion model that can integrate gene expression, histological images, and spatial location. And the information interaction within modalities is strengthened by introducing an a…

    Jupyter Notebook 23 1

  5. ST_BarcodeMap ST_BarcodeMap Public

    C++ 20 7

  6. StereoSiTE StereoSiTE Public

    Spatial transcriptome analysis in python

    Jupyter Notebook 20

Repositories

Showing 10 of 26 repositories
  • Stereopy Public

    A toolkit of spatial transcriptomic analysis.

    STOmics/Stereopy’s past year of commit activity
    Jupyter Notebook 179 MIT 59 15 0 Updated Jul 2, 2024
  • CellBin Public

    Tools for generating single-cell gene expression data

    STOmics/CellBin’s past year of commit activity
    Python 26 MIT 2 9 0 Updated Jun 28, 2024
  • geftools Public
    STOmics/geftools’s past year of commit activity
    C++ 1 1 1 0 Updated Jun 13, 2024
  • StereoSiTE Public

    Spatial transcriptome analysis in python

    STOmics/StereoSiTE’s past year of commit activity
    Jupyter Notebook 20 GPL-3.0 0 2 0 Updated Jun 7, 2024
  • Spatialign Public

    Spatially Resolved Transcriptomics Integration Algorithm

    STOmics/Spatialign’s past year of commit activity
    Jupyter Notebook 3 MIT 0 1 0 Updated May 24, 2024
  • StereoMMv1 Public

    StereoMM is a graph fusion model that can integrate gene expression, histological images, and spatial location. And the information interaction within modalities is strengthened by introducing an attention mechanism.

    STOmics/StereoMMv1’s past year of commit activity
    Jupyter Notebook 23 1 0 0 Updated May 14, 2024
  • SAW Public
    STOmics/SAW’s past year of commit activity
    HTML 123 GPL-3.0 32 17 3 Updated Apr 30, 2024
  • ST-GEARS Public

    A Spatial Transcriptomics Geospatial Profile Recovery System Tool through Anchors

    STOmics/ST-GEARS’s past year of commit activity
    Jupyter Notebook 10 MIT 0 1 0 Updated Apr 26, 2024
  • CoDi Public
    STOmics/CoDi’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Apr 17, 2024
  • udi Public

    UMI Defined Cell Segmentation Tool UDi-CST

    STOmics/udi’s past year of commit activity
    Python 0 0 0 0 Updated Mar 29, 2024

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Most used topics

Loading…