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deepTools - bamPEFragmentSize, plotPCA #54

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ewels opened this issue Nov 29, 2017 · 4 comments
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deepTools - bamPEFragmentSize, plotPCA #54

ewels opened this issue Nov 29, 2017 · 4 comments

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@ewels
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ewels commented Nov 29, 2017

When running with paired-end input, it could be nice to run deepTools bamPEFragmentSize (and pick this up in the MultiQC report). See http://deeptools.readthedocs.io/en/latest/content/tools/bamPEFragmentSize.html

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@ewels ewels changed the title deepTools bamPEFragmentSize deepTools - bamPEFragmentSize, plotPCA Nov 29, 2017
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ewels commented Nov 29, 2017

Also a PCA plot using plotPCA - http://deeptools.readthedocs.io/en/latest/content/tools/plotPCA.html

@ewels ewels mentioned this issue Dec 1, 2017
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@chuan-wang
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Solved.

@ewels
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ewels commented Jan 10, 2018

Not yet solved - still waiting for integration into MultiQC.

@ewels ewels reopened this Jan 10, 2018
@chuan-wang
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Aha, sorry.

@ewels ewels mentioned this issue Jun 13, 2018
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@ewels ewels closed this as completed Jun 13, 2018
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@ewels @chuan-wang