Python interface to the GenoLogics LIMS server via its REST API.
Tornado server for tracking samples at NGI Stockholm
Cancer Analysis Workflow prototype
Repository to store standalone scripts that do not belong to any bigger package or repository
A collection of Genologics Clarity LIMS EPPs used at Scilifelab.
Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
TIDDIT - structural variant calling
Tool for the Automation of Cleanup and Analyses
Course homepages for some of the courses given at SciLifeLab
Ansible repository for deployment stuff
Common documentation for National Genomics Infrastructure pipelines built with Nextflow
Methylation (Bisulfite-Sequencing) Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
Nextflow Small RNA Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
Python interface for the Genologics Postgres database.
Nextflow ChIP-seq data analysis pipeline, National Genomics Infrastructure, Science for Life Laboratory in Stockholm
A TACA plugin adding functionality relevant for the ngi_pipeline
Python wrappers and methods to work with CouchDB's instance at NGI Stockholm
structural variant database software
Collection of python scripts to parse Illumina (demux with bcl2fastq v2.17+) output
Misc code snippets for Science For Life Laboratory
VWorks protocols and other files for the Agilent NGS Workstations at the Genomics facility at SciLifeLab.
Fast and Accurate Classification of Sequences using Bloom filters
A collection of blogs written by SciLifeLab affiliated authors
Module for scilifelab parsers of metrics and other files