@SciLifeLab

Science For Life Laboratory

Science for Life Laboratory (SciLifeLab) is a national center for molecular biosciences with focus on health and environmental research

  • Python interface to the GenoLogics LIMS server via its REST API.

    Python 14 20 Updated Feb 22, 2017
  • Tornado server for tracking samples at NGI Stockholm

    JavaScript 7 13 Updated Feb 22, 2017
  • Cancer Analysis Workflow prototype

    docker workflow bioinformatics pipeline genomics nextflow cancer

    Groovy 13 12 Updated Feb 21, 2017
  • Repository to store standalone scripts that do not belong to any bigger package or repository

    Python 1 12 Updated Feb 21, 2017
  • A collection of Genologics Clarity LIMS EPPs used at Scilifelab.

    Python 3 Updated Feb 17, 2017
  • Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.

    bioinformatics rna-seq pipeline nextflow rnaseq rna-sequencing

    Groovy 6 9 Updated Feb 17, 2017
  • Shell 2 Updated Feb 15, 2017
  • TIDDIT - structural variant calling

    C++ 1 2 Updated Feb 14, 2017
  • Tool for the Automation of Cleanup and Analyses

    Python 4 11 Updated Feb 13, 2017
  • Course homepages for some of the courses given at SciLifeLab

    HTML 5 46 Updated Feb 7, 2017
  • Python 5 Updated Jan 30, 2017
  • Ansible repository for deployment stuff

    1 3 Updated Jan 26, 2017
  • Common documentation for National Genomics Infrastructure pipelines built with Nextflow

    Groovy 3 2 Updated Dec 22, 2016
  • Methylation (Bisulfite-Sequencing) Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.

    Groovy 4 2 Updated Dec 14, 2016
  • Nextflow Small RNA Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.

    Groovy 1 6 Updated Dec 8, 2016
  • Python interface for the Genologics Postgres database.

    Python 1 3 Updated Nov 21, 2016
  • Nextflow ChIP-seq data analysis pipeline, National Genomics Infrastructure, Science for Life Laboratory in Stockholm

    Groovy 1 3 Updated Nov 16, 2016
  • A TACA plugin adding functionality relevant for the ngi_pipeline

    Python 5 Updated Nov 11, 2016
  • Python wrappers and methods to work with CouchDB's instance at NGI Stockholm

    Python 2 5 Updated Oct 19, 2016
  • Python 3 12 Updated Oct 18, 2016
  • SVDB

    Forked from J35P312/SVDB

    structural variant database software

    Python 2 Updated Sep 27, 2016
  • Collection of python scripts to parse Illumina (demux with bcl2fastq v2.17+) output

    Python 2 7 Updated Sep 15, 2016
  • Misc code snippets for Science For Life Laboratory

    Python 6 24 Updated Aug 8, 2016
  • VWorks protocols and other files for the Agilent NGS Workstations at the Genomics facility at SciLifeLab.

    Prolog 2 Updated Jun 21, 2016
  • hugin

    Forked from b97pla/hugin

    Status monitor

    Python 2 7 Updated Mar 3, 2016
  • Fast and Accurate Classification of Sequences using Bloom filters

    Jupyter Notebook 14 11 Updated Dec 17, 2015
  • JavaScript 2 2 Updated Jun 30, 2015
  • JavaScript 1 Updated Jun 30, 2015
  • A collection of blogs written by SciLifeLab affiliated authors

    CSS Updated Jun 20, 2015
  • Module for scilifelab parsers of metrics and other files

    Python 3 Updated Apr 13, 2015