fix requirements for runSingleManta and runSingleStrelka

SciLifeLab · Oct 25, 2017 · 9825faa · 9825faa
1 parent a163e10
commit 9825faa
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diff --git a/configuration/uppmax-localhost.config b/configuration/uppmax-localhost.config
@@ -129,6 +129,14 @@ process {
   }
   $RunSamtoolsStats {
   }
+  $RunSingleManta {
+    cpus = 16
+    memory = {params.totalMemory}
+  }
+  $RunSingleStrelka {
+    cpus = 16
+    memory = {params.totalMemory}
+  }
   $RunSnpeff {
     errorStrategy = {task.exitStatus == 143 ? 'retry' : 'ignore'}
     memory = {params.totalMemory} // TODO Does SnpEff really require that much?

diff --git a/configuration/uppmax-slurm.config b/configuration/uppmax-slurm.config
@@ -132,6 +132,11 @@ process {
     cpus = 1
     time = {params.runTime * task.attempt}
   }
+  $RunSingleManta {
+  }
+  $RunSingleStrelka {
+    time = {params.runTime * task.attempt}
+  }
   $RunSnpeff {
     errorStrategy = { task.exitStatus == 143 ? 'retry' : 'ignore' }
   }