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Installing stable version and development version
You can install the latest (stable) release as a python library via the package manager pip.
The stable released version can be installed with pip using
pip install bruker2nifti
(installing inside a python virtualenvironment is warmly recommended).
To install the current development version, clone the git repository and install the Python requirements via pip with
git clone https://github.com/SebastianoF/bruker2nifti.git
cd bruker2nifti
python setup.py bdist_wheel # do not use sdist due to clash with git versioning query.
cd ../
pip install bruker2nifti/dist/bruker2nifti-XX.whl
where XX is the latest version downloaded.
To install the development version in development mode, type:
git clone https://github.com/SebastianoF/bruker2nifti.git
cd bruker2nifti
pip install -e .
This command will install Bruker2Nifti in development mode: it will create a .egg-link in the deployment directory to the project source code directory. Suggested in case you want to make some modifications to the code, and see the effects without re-installing each time.
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pip freezelists the libraries in your environment, where you should find bruker2nifti (with a long path if installed in development mode). -
Test the code on some examples.
pip uninstall bruker2nifti
To delete the library in the virtualenv in case something wrong and pip uninstall will not be able to work correctly:
sudo rm -rf /path_to_site_packages_in_virtualenv/site-packages/bruker2nifti*
Note: pip install and uninstall, unless in development mode, should always be performed outside the root of the project.