Awesome Rust Biology Algorithms

A currated list of algorithms implemented in rust for biological analysis.

General libraries

• rust-bio

Sequence analysis

• RustBLAST - Implementation of the BLAST algorithm in Rust
• onecodex/finch-rs - A genomic minhashing implementation in Rust
• 10XGenomics/rust-pseudoaligner - Single-Cell RNA-seq pseudo-aligner
• rust-debruijn - De Bruijn graph construction & path compression libraries.
• onecodex/needletail - Fast FASTX parsing and k-mer methods in Rust
• onecodex/sdust - Finds low-complexity regions in DNA sequences.

Uncategorized

• https://github.com/mttmartin/anneal_predictor

See Also...

• https://github.com/rust-unofficial/awesome-rust