Example analyses carried out and included in the phenopredict paper
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README.md
dgea_analysis.Rmd
dgea_analysis.html
identify_study.Rmd
identify_study.html
sex_summary.Rmd
sex_summary.html

README.md

phenopredict_usecase

Example analyses carried out and included in the phenopredict paper

Analysis #1: sex_summary

Summarizes sex across samples included in recount2 from across the SRA

Analysis #2: identify_study

Uses predicted phenotypes to identify a study of interest

Analysis #3: dgea_analysis

Carries out differential gene expression analysis in study of interest. Includes predicted sex and predicted tissue in analysis