1000GenomeVCFDownload.sh

# Download 1000 genome vcf files
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for i in {1..22} X Y MT
do
wget http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/ALL.chr$i.phase3_shapeit2_mvncall_integrated_v5a.20130502.genotypes.vcf.gz
wget http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/ALL.chr$i.phase3_shapeit2_mvncall_integrated_v5a.20130502.genotypes.vcf.gz.tbi
done
# download part data with perl script 
perl ./vcf_to_ped_convert.pl -vcf ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20110521/ALL.chr13.phase1_integrated_calls.20101123.snps_indels_svs.genotypes.vcf.gz -sample_panel_file ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20110521/phase1_integrated_calls.20101123.ALL.sample_panel -region 13:32889611-32973805 -population GBR -population FIN