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1000GenomeVCFDownload.sh
1000GenomeVCFDownload.sh
 
 
BSSeeker2.sh
BSSeeker2.sh
 
 
BSSeeker2MappingStatistic.pl
BSSeeker2MappingStatistic.pl
 
 
BSSeeker2pipeline.pl
BSSeeker2pipeline.pl
 
 
BSseeker.sh
BSseeker.sh
 
 
BioinfoDatabaseBuild.sh
BioinfoDatabaseBuild.sh
 
 
CGmap2bedgraph.pl
CGmap2bedgraph.pl
 
 
CHAMP-MH450.R
CHAMP-MH450.R
 
 
CUBN.sh
CUBN.sh
 
 
ChAMP.R
ChAMP.R
 
 
ClusterAnalysisPlot.R
ClusterAnalysisPlot.R
 
 
CpGI.format.pl
CpGI.format.pl
 
 
CpGReport2bedgraph.pl
CpGReport2bedgraph.pl
 
 
DE.sh
DE.sh
 
 
DEG.R
DEG.R
 
 
DMR.CHAMP.450K.R
DMR.CHAMP.450K.R
 
 
DMR.CHAMP.R
DMR.CHAMP.R
 
 
Deconvolution.simulation.R
Deconvolution.simulation.R
 
 
Downsampling.R
Downsampling.R
 
 
FastqMatchConfigure.pl
FastqMatchConfigure.pl
 
 
FindCpGSNP.pl
FindCpGSNP.pl
 
 
Findcpgsnp.pl
Findcpgsnp.pl
 
 
GEO2ChAMP.R
GEO2ChAMP.R
 
 
GPL16304_450K_trim.pl
GPL16304_450K_trim.pl
 
 
GSE52271.R
GSE52271.R
 
 
GSEAutoAnalysis.R
GSEAutoAnalysis.R
 
 
GSI.R
GSI.R
 
 
GSIMethDecon.R
GSIMethDecon.R
 
 
GetGEOData.R
GetGEOData.R
 
 
GuassianFillup.R
GuassianFillup.R
 
 
HMHDection.pl
HMHDection.pl
 
 
HapinfoSummary.pl
HapinfoSummary.pl
 
 
HeatMap.R
HeatMap.R
 
 
MDSPlot.R
MDSPlot.R
 
 
ManhattanPlot.R
ManhattanPlot.R
 
 
MethDMRByMethyAnalysis.R
MethDMRByMethyAnalysis.R
 
 
MethSearchRoadMapByLoc.pl
MethSearchRoadMapByLoc.pl
 
 
MethSearchRoadmapByTissue.pl
MethSearchRoadmapByTissue.pl
 
 
MethylFreq2bedgraph.pl
MethylFreq2bedgraph.pl
 
 
MethylFreq2wig.pl
MethylFreq2wig.pl
 
 
MitochondrialmatrixGeneration.pl
MitochondrialmatrixGeneration.pl
 
 
NGS.md
NGS.md
 
 
PCAPlot.R
PCAPlot.R
 
 
PEDtoLINKAGE.sh
PEDtoLINKAGE.sh
 
 
PT2Symbol.R
PT2Symbol.R
 
 
PanMethDMS.R
PanMethDMS.R
 
 
PancancerDiffMethAnalysis.R
PancancerDiffMethAnalysis.R
 
 
PancancerMethyDataCollection.pl
PancancerMethyDataCollection.pl
 
 
PileOMethByBedRegion.pl
PileOMethByBedRegion.pl
 
 
R2matrix2extentR2matrix.pl
R2matrix2extentR2matrix.pl
 
 
README.md
README.md
 
 
RefFreeEWAS.R
RefFreeEWAS.R
 
 
Rockhopper.pbs.sh
Rockhopper.pbs.sh
 
 
Rockhopper2matrix.pl
Rockhopper2matrix.pl
 
 
SKCM.TCGA.R
SKCM.TCGA.R
 
 
SRR2SRS.pl
SRR2SRS.pl
 
 
SRR2SortBam.pl
SRR2SortBam.pl
 
 
SRR2mf.job
SRR2mf.job
 
 
SRRDownloadbyWget.pl
SRRDownloadbyWget.pl
 
 
SingleAutoBismark.pl
SingleAutoBismark.pl
 
 
SraDownloadPBS.pl
SraDownloadPBS.pl
 
 
TCGA.LUSC.DMR.ChAMP.R
TCGA.LUSC.DMR.ChAMP.R
 
 
TCGA.THCA.DMR.CHAMP.R
TCGA.THCA.DMR.CHAMP.R
 
 
TCGABiomarkCHOL.R
TCGABiomarkCHOL.R
 
 
TCGADMSByCancerType.R
TCGADMSByCancerType.R
 
 
TMPRSS2.sh
TMPRSS2.sh
 
 
TSGSearch.pl
TSGSearch.pl
 
 
TSNEAnalysis.R
TSNEAnalysis.R
 
 
Textmining2Symbol.pl
Textmining2Symbol.pl
 
 
Tissue Specific Gene Expression.R
Tissue Specific Gene Expression.R
 
 
TissueSpecificExpression.R
TissueSpecificExpression.R
 
 
TissueSpecificExpressionMetric.R
TissueSpecificExpressionMetric.R
 
 
TwinsMH450DMRSmoking.R
TwinsMH450DMRSmoking.R
 
 
UUID2barcode.R
UUID2barcode.R
 
 
VcfSplitByChrosome.pbs.sh
VcfSplitByChrosome.pbs.sh
 
 
WilcoxTestPValue.R
WilcoxTestPValue.R
 
 
add_fake_genotype_vcf.pl
add_fake_genotype_vcf.pl
 
 
add_google_search.pl
add_google_search.pl
 
 
addfakegenotype.pl
addfakegenotype.pl
 
 
addrsidsnp.pl
addrsidsnp.pl
 
 
assess.R
assess.R
 
 
bam2Hapinfo_SamConfig.pl
bam2Hapinfo_SamConfig.pl
 
 
bam2amfBybedByPileOMethPBS.pl
bam2amfBybedByPileOMethPBS.pl
 
 
bam2bai.pl
bam2bai.pl
 
 
bam2fastq
bam2fastq
 
 
bam2genomecov.pl
bam2genomecov.pl
 
 
bam2hapinfoPBS.pl
bam2hapinfoPBS.pl
 
 
bam2methyfreqPBS.pl
bam2methyfreqPBS.pl
 
 
bam2mf.pbs.sh
bam2mf.pbs.sh
 
 
bam2mfcheck.pl
bam2mfcheck.pl
 
 
bam2mhb
bam2mhb
 
 
bam2sortBam.pl
bam2sortBam.pl
 
 
bam2sortbam.pbs.sh
bam2sortbam.pbs.sh
 
 
bamFlagParse.pl
bamFlagParse.pl
 
 
bamMerge.pl
bamMerge.pl
 
 
bamMergeBySRS2Sort.pl
bamMergeBySRS2Sort.pl
 
 
barplot8ggplot2.R
barplot8ggplot2.R
 
 
bdg2bw.sh
bdg2bw.sh
 
 
beagle.sh
beagle.sh
 
 
bed2Cluster.pl
bed2Cluster.pl
 
 

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Gscutility (Update, 2019/08/19)

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v1.0.5 Latest
Apr 24, 2021
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