SlicerRegistrationLibrary

Library of registration cases including step-by-step instructions and discussions

Slicer Registration FAQ : answers to the most common questions/problems, including cookbook recipes for common registration steps. Slicer Registration Training Videos: brief videos/screencasts showing step-by-step approaches to the most common tasks.
Slicer Resampling Overview a summary of how 3DSlicer handles transforms and how image resampling is performed.

ID	Description (click on image to access case page)	Structure/Pathology	Type of Registration	Modality	Download
1	$RegLib C01: MR Meningioma\ 200x143$ Align baseline MR of meningioma with follow-up.	brain / tumor	rigid+ affine	MRI	RegLib_C01.mrb (input data only , Slicer mrb file. 13 MB)
2	$RegLib C02: MR Meningioma\ 200x200$ Align MRI FLAIR with lesion segmentation to T1	multiple sclerosis	affine	MRI	RegLib_C02.mrb (input data only , Slicer mrb file. 19 MB) RegLib_C02_full.mrb (input data + results, Slicer mrb file. 19 MB).
3	$RegLib C03: DTI alignment\ 200x262$ Align DTI volume with structural reference scan (T2)	brain / tumor	affine + nonrigid	DTI	RegLib_C03.mrb (input data only , Slicer mrb file. 50 MB) RegLib_C03_full.mrb(input data + results, Slicer mrb file. 108 MB).
4	$RegLib C04: MS longitudinal+multispectral\ 200x244$ Align both intra- and inter-exam MRI of a single subject.	brain / multiple sclerosis	affine	MRI	RegLib_C04.mrb (input data only , Slicer mrb file. 19 MB) RegLib_C04_full.mrb (input data + results, Slicer mrb file. 19 MB).
6	$RegLib C06: Breast MRI pre/post\ 200x208$ Align pre- and post-Rx breast MRI	breast / cancer	affine+nonrigid	MRI	RegLib_C06.mrb (input data only , Slicer mrb file. 40 MB) RegLib_C06_full.mrb (input data + results, Slicer mrb file. 65 MB).
7	$RegLib C07: Prostate MRI pre/post\ 200x199$ Align baseline and follow-up prostate MRI	prostate / cancer	affine+nonrigid	MRI	RegLib_C07.mrb (input data only , Slicer mrb file. 8 MB) RegLib_C07_full.mrb (input data + results, Slicer mrb file. 27 MB).
8	$RegLib C08: abdominal PET-CT pre/post\ 200x199$ Align baseline and follow-up PET/CT	pairs	affine+nonrigid	PET CT	RegLib_C08.mrb (input data only , Slicer mrb file. 8 MB) RegLib_C08_full.mrb (input data + results, Slicer mrb file. 27 MB).
9	$RegLib C09: fMRI to T1\ 200x195$ Align fMRI with structural MRI	brain	rigid+nonrigid	MRI	RegLib_C09.mrb (input data only , Slicer mrb file. 40 MB) RegLib_C09_full.mrb (input data + results, Slicer mrb file. 182 MB).
10	$RegLib C10: Atlas to T1\ 200x211$ Align probabilistic/group atlas with T1	brain	rigid+nonrigid	MRI	RegLib_C10.mrb (input data only , Slicer mrb file. 12 MB) RegLib_C10_full.mrb (input data + results, Slicer mrb file. 50 MB).
12	$RegLib C12: Abdominal MR-CT\ 200x164$ Align abdominal MRI with CT	liver/ tumor	affine + nonrigid	CT	RegLib_C12.mrb (input data only , Slicer mrb file. 35 MB) RegLib_C12_full.mrb (input data + results, Slicer mrb file. 68 MB).
14	$RegLib C14: MR-PET\ 200x185$ Align brain PET with low-res MRI	brain	affine + nonrigid	CT	RegLib_C14.mrb (input data only , Slicer mrb file. 9 MB) RegLib_C14_full.mrb (input data + results, Slicer mrb file. 22 MB).
15	$RegLib C15: AC-PC\ 200x150$ AC-PC alignment of brain MRI	brain	affine + nonrigid	CT	RegLib_C15.mrb (input data only (incl. example fiducials) , Slicer mrb file. 22 MB) RegLib_C15_full.mrb (input data + results, Slicer mrb file. 22 MB).
17	$RegLib C17: Abdominal MR-CT\ 200x187$ Preop MRI to intraop interventional CT	abdominal	affine	CT	RegLib_C17.mrb (input data only (incl. example fiducials) , Slicer mrb file. 10 MB) RegLib_C17_full.mrb (input data + results, Slicer mrb file. 12 MB).
20	$RegLib C20 Thumb1.png\ 200x155$ Alignment of PET/CT follow-up to baseline	full body	rigid + affine + nonrigid	PET/CT	RegLib_C20.mrb (input data only , Slicer mrb file. 76 MB) RegLib_C20_full.mrb (input data + results, Slicer mrb file. 171 MB).
21	$RegLib C21 Thumb1.png\ 200x183$ Alignment of knee MRI (2 different subjects)	knee	rigid + affine + nonrigid	MRI	RegLib_C21.mrb (input data + results, Slicer mrb file. 12 MB).
27	$RegLib C27 Thumb4.png\ 200x200$ Alignment of DTI scan to structural reference T1-SPGR for surgical planning (tumor resection)	brain / tumor	affine + nonrigid	DTI	RegLib_C27.mrb (input data, Slicer mrb file 50MB) RegLib_C27_full.mrb (input data + results, Slicer mrb file 114MB)
29	$RegLib C29 Thumb.png\ 200x273$ Alignment of DTI scan to structural reference T2/T1-SPGR for surgical planning (tumor resection)	brain / tumor	affine + nonrigid	DTI	RegLib_C29_raw.mrb (input data, Slicer mrb file. 71 MB). RegLib_C29_full.mrb (input data+results, Slicer mrb file. 124 MB).
32	$RegLib C32 Thumb4.png\ 200x254$ Alignment of structural reference T1 to a DTI scan	brain	affine + nonrigid	DTI	RegLib_C32.mrb (input data, Slicer mrb file. 31 MB). RegLib_C32_full.mrb (input data+results, Slicer mrb file. 36 MB).
37	$UnderConstruction.png\ 40x40$ $RegLib C37: tumor resection\ 200x171$ brain tumor resection	brain	non-rigid	MRI	RegLib_C37.mrb (input data only, Slicer mrb file. 12 MB) RegLib_C7_full.mrb (input data + results, Slicer mrb file. 36 MB).
38	$RegLib C38 Thumb5.png\ 200x236$ Alignment of multi-sequence MRI	traumatic brain injury (TBI)	rigid	MRI	RegLib_C38.mrb (input data, Slicer mrb file. 42 MB).
39	$RegLib C39: in vitro CT of human vertebra\ 200x184$ in vitro CT of human vertebra before and after structural damage	vertebra	rigid	CT	RegLib_C39.mrb (input data only, Slicer mrb file. 25 MB) RegLib_C39_full.mrb (input data + results, Slicer mrb file. 45 MB).
40	$RegLib C40: micro CT of material sample\ 200x140$ register micro-CT of wood sample to quantify/model structural changes wood	sample	non-rigid	micro-CT	RegLib_C40.mrb (input data only, Slicer mrb file. 32 MB) RegLib_C40_full.mrb (input data + results, Slicer mrb file. 100 MB).
41	$RegLib C41: mouse brain MRI\ 200x295$ Align two distinct mouse brain MRIs	mouse brain	non-rigid	MRI	RegLib_C41.mrb (input data only, Slicer mrb file. 32 MB) RegLib_C41_full.mrb (input data + results, Slicer mrb file. 100 MB).
42	$RegLib C42: pediatric MRI\ 200x209$	autism / brain	non-rigid	MRI	RegLib_C42.mrb (input data only, Slicer mrb file. 12 MB) RegLib_C42_full.mrb (input data + results, Slicer mrb file. 36 MB).
44	$RegLib C44: pelvic MRI\ 200x154$	pelvis abdominal	non-rigid	MRI	RegLib_C44.mrb (input data only, Slicer mrb file. 74 MB) RegLib_C44_full.mrb (input data + results, Slicer mrb file. 82 MB).
46	$RegLib C46: 2D cine MRI of breathing cycle\ 200x216$ 2D cine MRI of breathing cycle	abdominal	non-rigid 2D, batch processing	MRI	RegLib_C46.mrb (input data (ref + 1 slice only), Slicer mrb file. 0.6 MB) RegLib_C46_Data.zip (input data + results, zip file with original DICOM + registration script. 65 MB).
48	$RegLib C48: Fiducial Registration of Abdominal MR-CT\ 200x190$ Preop MRI to intraop interventional CT	abdominal	Fiducial-based rigid	CT	RegLib_C48.mrb (input data only (incl. example fiducials) , Slicer mrb file. 10 MB) RegLib_C48_full.mrb (input data + results, Slicer mrb file. 12 MB).
49	$RegLib C49: Pediatric Brain MR-DTI\ 200x170$ Pediatric Brain MR-DTI	brain	affine + BSpline	MRI	RegLib_C49.mrb (input data only (incl. example fiducials) , Slicer mrb file. 50 MB) RegLib_C49_full.mrb (input data + results, Slicer mrb file. 82 MB).
50	$RegLib C50: Mouse CT\ 200x141$ mouse brain micro-CT	mouse brain	affine + BSpline	micro-CT	RegLib_C50.mrb (input data only (incl. example fiducials) , Slicer mrb file. 50 MB) RegLib_C50_full.mrb (input data + results, Slicer mrb file. 82 MB).