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Add lifting code for the 11k SomaScan menu #78

Closed
1 of 3 tasks
stufield opened this issue Jan 22, 2024 · 0 comments
Closed
1 of 3 tasks

Add lifting code for the 11k SomaScan menu #78

stufield opened this issue Jan 22, 2024 · 0 comments
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@stufield
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feature New feature or request

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@stufield
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Feature

New SomaScan 11k bridge needs to be added to lift_adat()

  • this will likely involve new linear scalars
  • possibly a new internal object to contain the relevant scale factors
  • possibly a refactoring of code to use an internal object rather than an external Excel file

Priority Level

  • High
  • Medium
  • Low

Thanks for contributing 🥳!
@stufield stufield self-assigned this Jan 22, 2024
stufield added a commit to stufield/SomaDataIO that referenced this issue Jan 30, 2024
@stufield
Restructure of lift_adat() functionality
edcd905 
- `lift_adat()` now takes a `bridge =` argument,
  replacing the `anno.tbl =` argument. Lifting
  is now performed internally for a better (and safer)
  user experience, without the necessity of an
  external annotations file.
- the majority of this refactoring was internal
  and the user should not experience a major
  disruption to the API.
- fixes SomaLogic#81, fixes SomaLogic#78
stufield added a commit to stufield/SomaDataIO that referenced this issue Feb 13, 2024
@stufield
Restructure of lift_adat() functionality
f72d409 
- `lift_adat()` now takes a `bridge =` argument,
  replacing the `anno.tbl =` argument. Lifting
  is now performed internally for a better (and safer)
  user experience, without the necessity of an
  external annotations file.
- the majority of this refactoring was internal
  and the user should not experience a major
  disruption to the API.
- fixes SomaLogic#81, fixes SomaLogic#78
@stufield stufield added the feature New feature or request label Feb 14, 2024
stufield added a commit to stufield/SomaDataIO that referenced this issue Feb 15, 2024
@stufield
Restructure of lift_adat() functionality
8ca02dd 
- `lift_adat()` now takes a `bridge =` argument,
  replacing the `anno.tbl =` argument. Lifting
  is now performed internally for a better (and safer)
  user experience, without the necessity of an
  external annotations file.
- the majority of this refactoring was internal
  and the user should not experience a major
  disruption to the API.
- fixes SomaLogic#81, fixes SomaLogic#78
stufield added a commit to stufield/SomaDataIO that referenced this issue Feb 15, 2024
@stufield
Restructure of lift_adat() functionality
ccba714 
- `lift_adat()` now takes a `bridge =` argument,
  replacing the `anno.tbl =` argument. Lifting
  is now performed internally for a better (and safer)
  user experience, without the necessity of an
  external annotations file.
- the majority of this refactoring was internal
  and the user should not experience a major
  disruption to the API.
- fixes SomaLogic#81, fixes SomaLogic#78
stufield added a commit to stufield/SomaDataIO that referenced this issue Feb 15, 2024
@stufield
Restructure of lift_adat() functionality
7596bc2 
- `lift_adat()` now takes a `bridge =` argument,
  replacing the `anno.tbl =` argument. Lifting
  is now performed internally for a better (and safer)
  user experience, without the necessity of an
  external annotations file.
- the majority of this refactoring was internal
  and the user should not experience a major
  disruption to the API.
- new function `is_lifted()`
- fixes SomaLogic#81, fixes SomaLogic#78
stufield added a commit to stufield/SomaDataIO that referenced this issue Feb 16, 2024
@stufield
Restructure of lift_adat() functionality
6794252 
- `lift_adat()` now takes a `bridge =` argument,
  replacing the `anno.tbl =` argument. Lifting
  is now performed internally for a better (and safer)
  user experience, without the necessity of an
  external annotations file.
- the majority of this refactoring was internal
  and the user should not experience a major
  disruption to the API.
- new function `is_lifted()`
- fixes SomaLogic#81, fixes SomaLogic#78
stufield added a commit to stufield/SomaDataIO that referenced this issue Feb 16, 2024
@stufield
Restructure of lift_adat() functionality
8a8f1c0 
- `lift_adat()` now takes a `bridge =` argument,
  replacing the `anno.tbl =` argument. Lifting
  is now performed internally for a better (and safer)
  user experience, without the necessity of an
  external annotations file. Much simpler user experience.
- the majority of this refactoring was internal
  and the user should not experience a major
  disruption to the API.
- new internal objects `lift_master` and `lref`
  as sources of internal scaling factors (lifting)
- new function `is_lifted()`
- fixes SomaLogic#81, fixes SomaLogic#78
stufield added a commit to stufield/SomaDataIO that referenced this issue Feb 16, 2024
@stufield
Restructure of lift_adat() functionality
a7a02ab 
- `lift_adat()` now takes a `bridge =` argument,
  replacing the `anno.tbl =` argument. Lifting
  is now performed internally for a better (and safer)
  user experience, without the necessity of an
  external annotations file. Much simpler user experience.
- the majority of this refactoring was internal
  and the user should not experience a major
  disruption to the API.
- new internal objects `lift_master` and `lref`
  as sources of internal scaling factors (lifting)
- new function `is_lifted()`
- fixes SomaLogic#81, fixes SomaLogic#78
stufield added a commit to stufield/SomaDataIO that referenced this issue Feb 16, 2024
@stufield
Restructure of lift_adat() functionality
6fdb9b4 
- `lift_adat()` now takes a `bridge =` argument,
  replacing the `anno.tbl =` argument. Lifting
  is now performed internally for a better (and safer)
  user experience, without the necessity of an
  external annotations file. Much simpler user experience.
- the majority of this refactoring was internal
  and the user should not experience a major
  disruption to the API.
- new internal objects `lift_master` and `lref`
  as sources of internal scaling factors (lifting)
- new function `is_lifted()`
- fixes SomaLogic#81, fixes SomaLogic#78
stufield added a commit to stufield/SomaDataIO that referenced this issue Feb 20, 2024
@stufield
Restructure of lift_adat() functionality
26e76c8 
- `lift_adat()` now takes a `bridge =` argument,
  replacing the `anno.tbl =` argument. Lifting
  is now performed internally for a better (and safer)
  user experience, without the necessity of an
  external annotations file. Much simpler user experience.
- the majority of this refactoring was internal
  and the user should not experience a major
  disruption to the API.
- new internal objects `lift_master` and `lref`
  as sources of internal scaling factors (lifting)
- new function `is_lifted()`
- fixes SomaLogic#81, fixes SomaLogic#78
stufield added a commit to stufield/SomaDataIO that referenced this issue Feb 20, 2024
@stufield
Restructure of lift_adat() functionality
4d4b744 
- `lift_adat()` now takes a `bridge =` argument,
  replacing the `anno.tbl =` argument. Lifting
  is now performed internally for a better (and safer)
  user experience, without the necessity of an
  external annotations file. Much simpler user experience.
- the majority of this refactoring was internal
  and the user should not experience a major
  disruption to the API.
- new internal objects `lift_master` and `lref`
  as sources of internal scaling factors (lifting)
- new function `is_lifted()`
- fixes SomaLogic#81, fixes SomaLogic#78
stufield added a commit to stufield/SomaDataIO that referenced this issue Feb 20, 2024
@stufield
Restructure of lift_adat() functionality
1a080d5 
- `lift_adat()` now takes a `bridge =` argument,
  replacing the `anno.tbl =` argument. Lifting
  is now performed internally for a better (and safer)
  user experience, without the necessity of an
  external annotations file. Much simpler user experience.
- the majority of this refactoring was internal
  and the user should not experience a major
  disruption to the API.
- new internal objects `lift_master` and `lref`
  as sources of internal scaling factors (lifting)
- new function `is_lifted()`
- fixes SomaLogic#81, fixes SomaLogic#78
stufield added a commit to stufield/SomaDataIO that referenced this issue Feb 20, 2024
@stufield
Restructure of lift_adat() functionality
30eea82 
- `lift_adat()` now takes a `bridge =` argument,
  replacing the `anno.tbl =` argument. Lifting
  is now performed internally for a better (and safer)
  user experience, without the necessity of an
  external annotations file. Much simpler user experience.
- the majority of this refactoring was internal
  and the user should not experience a major
  disruption to the API.
- new internal objects `lift_master` and `lref`
  as sources of internal scaling factors (lifting)
- new function `is_lifted()`
- fixes SomaLogic#81, fixes SomaLogic#78
stufield added a commit to stufield/SomaDataIO that referenced this issue Feb 20, 2024
@stufield
Restructure of lift_adat() functionality
9790dba 
- `lift_adat()` now takes a `bridge =` argument,
  replacing the `anno.tbl =` argument. Lifting
  is now performed internally for a better (and safer)
  user experience, without the necessity of an
  external annotations file. Much simpler user experience.
- the majority of this refactoring was internal
  and the user should not experience a major
  disruption to the API.
- new internal objects `lift_master` and `lref`
  as sources of internal scaling factors (lifting)
- new function `is_lifted()`
- fixes SomaLogic#81, fixes SomaLogic#78
stufield added a commit to stufield/SomaDataIO that referenced this issue Feb 21, 2024
@stufield
Restructure of lift_adat() functionality
f327c72 
- `lift_adat()` now takes a `bridge =` argument,
  replacing the `anno.tbl =` argument. Lifting
  is now performed internally for a better (and safer)
  user experience, without the necessity of an
  external annotations file. Much simpler user experience.
- the majority of this refactoring was internal
  and the user should not experience a major
  disruption to the API.
- new internal objects `lift_master` and `lref`
  as sources of internal scaling factors (lifting)
- new function `is_lifted()`
- fixes SomaLogic#81, fixes SomaLogic#78
stufield added a commit to stufield/SomaDataIO that referenced this issue Feb 21, 2024
@stufield
Restructure of lift_adat() functionality
d1b7b50 
- `lift_adat()` now takes a `bridge =` argument,
  replacing the `anno.tbl =` argument. Lifting
  is now performed internally for a better (and safer)
  user experience, without the necessity of an
  external annotations file. Much simpler user experience.
- the majority of this refactoring was internal
  and the user should not experience a major
  disruption to the API.
- new internal objects `lift_master` and `lref`
  as sources of internal scaling factors (lifting)
- new function `is_lifted()`
- fixes SomaLogic#81, fixes SomaLogic#78
stufield added a commit to stufield/SomaDataIO that referenced this issue Feb 22, 2024
@stufield
Restructure of lift_adat() functionality
6ed0824 
- `lift_adat()` now takes a `bridge =` argument,
  replacing the `anno.tbl =` argument. Lifting
  is now performed internally for a better (and safer)
  user experience, without the necessity of an
  external annotations file. Much simpler user experience.
- the majority of this refactoring was internal
  and the user should not experience a major
  disruption to the API.
- new internal objects `lift_master` and `lref`
  as sources of internal scaling factors (lifting)
- new function `is_lifted()`
- fixes SomaLogic#81, fixes SomaLogic#78
stufield added a commit to stufield/SomaDataIO that referenced this issue Feb 22, 2024
@stufield
Restructure of lift_adat() functionality
375f605 
- `lift_adat()` now takes a `bridge =` argument,
  replacing the `anno.tbl =` argument. Lifting
  is now performed internally for a better (and safer)
  user experience, without the necessity of an
  external annotations file. Much simpler user experience.
- the majority of this refactoring was internal
  and the user should not experience a major
  disruption to the API.
- new internal objects `lift_master` and `lref`
  as sources of internal scaling factors (lifting)
- new function `is_lifted()`
- fixes SomaLogic#81, fixes SomaLogic#78
stufield added a commit to stufield/SomaDataIO that referenced this issue Feb 22, 2024
@stufield
Restructure of lift_adat() functionality
c3ec2a0 
- `lift_adat()` now takes a `bridge =` argument,
  replacing the `anno.tbl =` argument. Lifting
  is now performed internally for a better (and safer)
  user experience, without the necessity of an
  external annotations file. Much simpler user experience.
- the majority of this refactoring was internal
  and the user should not experience a major
  disruption to the API.
- new internal objects `lift_master` and `lref`
  as sources of internal scaling factors (lifting)
- new function `is_lifted()`
- fixes SomaLogic#81, fixes SomaLogic#78
stufield added a commit to stufield/SomaDataIO that referenced this issue Feb 29, 2024
@stufield
Restructure of lift_adat() functionality
5344ca3 
- `lift_adat()` now takes a `bridge =` argument,
  replacing the `anno.tbl =` argument. Lifting
  is now performed internally for a better (and safer)
  user experience, without the necessity of an
  external annotations file. Much simpler user experience.
- the majority of this refactoring was internal
  and the user should not experience a major
  disruption to the API.
- new internal objects `lift_master` and `lref`
  as sources of internal scaling factors (lifting)
- new function `is_lifted()`
- fixes SomaLogic#81, fixes SomaLogic#78
stufield added a commit to stufield/SomaDataIO that referenced this issue Feb 29, 2024
@stufield
Restructure of lift_adat() functionality
200321c 
- `lift_adat()` now takes a `bridge =` argument,
  replacing the `anno.tbl =` argument. Lifting
  is now performed internally for a better (and safer)
  user experience, without the necessity of an
  external annotations file. Much simpler user experience.
- the majority of this refactoring was internal
  and the user should not experience a major
  disruption to the API.
- new internal objects `lift_master` and `lref`
  as sources of internal scaling factors (lifting)
- new function `is_lifted()`
- fixes SomaLogic#81, fixes SomaLogic#78
stufield added a commit to stufield/SomaDataIO that referenced this issue Feb 29, 2024
@stufield
Restructure of lift_adat() functionality
3b13340 
- `lift_adat()` now takes a `bridge =` argument,
  replacing the `anno.tbl =` argument. Lifting
  is now performed internally for a better (and safer)
  user experience, without the necessity of an
  external annotations file. Much simpler user experience.
- the majority of this refactoring was internal
  and the user should not experience a major
  disruption to the API.
- new internal objects `lift_master` and `lref`
  as sources of internal scaling factors (lifting)
- new function `is_lifted()`
- fixes SomaLogic#81, fixes SomaLogic#78
stufield added a commit to stufield/SomaDataIO that referenced this issue Feb 29, 2024
@stufield
Restructure of lift_adat() functionality
129ddae 
- `lift_adat()` now takes a `bridge =` argument,
  replacing the `anno.tbl =` argument. Lifting
  is now performed internally for a better (and safer)
  user experience, without the necessity of an
  external annotations file. Much simpler user experience.
- the majority of this refactoring was internal
  and the user should not experience a major
  disruption to the API.
- new internal objects `lift_master` and `lref`
  as sources of internal scaling factors (lifting)
- new function `is_lifted()`
- fixes SomaLogic#81, fixes SomaLogic#78
stufield added a commit to stufield/SomaDataIO that referenced this issue Mar 4, 2024
@stufield
Restructure of lift_adat() functionality
64cc874 
- `lift_adat()` now takes a `bridge =` argument,
  replacing the `anno.tbl =` argument. Lifting
  is now performed internally for a better (and safer)
  user experience, without the necessity of an
  external annotations file. Much simpler user experience.
- the majority of this refactoring was internal
  and the user should not experience a major
  disruption to the API.
- new internal objects `lift_master` and `lref`
  as sources of internal scaling factors (lifting)
- new function `is_lifted()`
- closes SomaLogic#81, closes SomaLogic#78
stufield added a commit to stufield/SomaDataIO that referenced this issue Mar 5, 2024
@stufield
Restructure of lift_adat() functionality
6f6dce0 
- `lift_adat()` now takes a `bridge =` argument,
  replacing the `anno.tbl =` argument. Lifting
  is now performed internally for a better (and safer)
  user experience, without the necessity of an
  external annotations file. Much simpler user experience.
- the majority of this refactoring was internal
  and the user should not experience a major
  disruption to the API.
- new internal objects `lift_master` and `lref`
  as sources of internal scaling factors (lifting)
- new function `is_lifted()`
- closes SomaLogic#81, closes SomaLogic#78
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