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CODE set show confining sphere optionally in MCsim
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this folder contains parser/helper files for wlcsim analysis | ||
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it was written for the use of the risca lab, but anyone else is free to use/edit it! | ||
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main code is MCsim which is a wlcsim output parser with some analysis methods, such as: | ||
* visualize trajectory in pymol | ||
* end-to-end distance | ||
* pairwise nucleosome distances | ||
* interpolate basepair resolution DNA structure between coarse-graied wlcsim beads | ||
* determine ricc-seq break patterns from interpolated fiber structure | ||
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some minimal helper functions also exist in utility, such as: | ||
* apply rotation/translation of linker DNA into and out of nucleosome | ||
* parametrize DNA as two offset helices to build a phosphate-base-phosphate representation of B-DNA |
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