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inhs update
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@proceps
proceps committed Sep 10, 2019
1 parent 923b14b commit a06c3e5
Showing 1 changed file with 19 additions and 62 deletions.
81 changes: 19 additions & 62 deletions lib/tasks/import/insects/insects.rake
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Expand Up @@ -351,6 +351,7 @@ namespace :tw do
print 'Handling namespaces '

catalogue_namespaces = [
'Amber',
'Acari',
'Araneae',
'Coleoptera',
Expand Down Expand Up @@ -379,76 +380,32 @@ namespace :tw do
]

if import.metadata['namespaces']
@taxon_namespace = Namespace.where(institution: 'INHS Insect Collection', name: 'INHS Taxon Code', short_name: 'Taxon Code').first
@accession_namespace = Namespace.where(institution: 'INHS Insect Collection', name: 'INHS Legacy Accession Code', short_name: 'Accession Code').first
@user_namespace = Namespace.where(institution: 'INHS Insect Collection', name: 'INHS Legacy User ID', short_name: 'User ID').first
@taxon_namespace = Namespace.where(institution: 'Illinois Natural History Survey', name: 'INHS Taxon Code', short_name: 'Taxon Code').first
@accession_namespace = Namespace.where(institution: 'Illinois Natural History Survey', name: 'INHS Legacy Accession Code', short_name: 'Accession Code').first
@user_namespace = Namespace.where(institution: 'Illinois Natural History Survey', name: 'INHS Legacy User ID', short_name: 'User ID').first
print "from database.\n"
else
print "as newly parsed.\n"
@taxon_namespace = Namespace.create(institution: 'INHS Insect Collection', name: 'INHS Taxon Code', short_name: 'Taxon Code')
@accession_namespace = Namespace.create(institution: 'INHS Insect Collection', name: 'INHS Legacy Accession Code', short_name: 'Accession Code')
@user_namespace = Namespace.create(institution: 'INHS Insect Collection', name: 'INHS Legacy User ID', short_name: 'User ID')
@taxon_namespace = Namespace.create(institution: 'Illinois Natural History Survey', name: 'INHS Taxon Code', short_name: 'Taxon Code')
@accession_namespace = Namespace.create(institution: 'Illinois Natural History Survey', name: 'INHS Legacy Accession Code', short_name: 'Accession Code')
@user_namespace = Namespace.create(institution: 'Illinois Natural History Survey', name: 'INHS Legacy User ID', short_name: 'User ID')
import.metadata['namespaces'] = true
end

catalogue_namespaces.each do |cn|
n = Namespace.where(institution: 'INHS Insect Collection', short_name: cn)
if n.empty?
n = Namespace.create(institution: 'INHS Insect Collection', name: 'INHS ' + cn, short_name: cn)
else
n = n.first
end
n = Namespace.find_or_create_by(institution: 'Illinois Natural History Survey', name: 'Illinois Natural History Survey ' + cn, short_name: 'INHS ' + cn)
data.namespaces[cn] = n
end

n = Namespace.where(institution: 'INHS Insect Collection', short_name: 'NEON')
if n.empty?
n = Namespace.create(institution: 'INHS Insect Collection', name: 'NEON', short_name: 'NEON')
else
n = n.first
end
n = Namespace.find_or_create_by(institution: 'Illinois Natural History Survey', name: 'INHS NEON', short_name: 'NEON')
data.namespaces['NEON'] = n

n = Namespace.where(institution: 'INHS Insect Collection', name: 'INHS loan invoice')
if n.empty?
n = Namespace.create(institution: 'INHS Insect Collection', name: 'INHS loan invoice', short_name: 'Invoice')
else
n = n.first
end
n = Namespace.find_or_create_by(institution: 'Illinois Natural History Survey', name: 'Illinois Natural History Survey loan invoice', short_name: 'INHS Invoice')
data.namespaces['Invoice'] = n

n = Namespace.where(institution: 'INHS Insect Collection', name: 'INHS container')
if n.empty?
n = Namespace.create(institution: 'INHS Insect Collection', name: 'INHS container', short_name: 'Container')
else
n = n.first
end
n = Namespace.find_or_create_by(institution: 'Illinois Natural History Survey', name: 'Illinois Natural History Survey container', short_name: 'INHS Container')
data.namespaces['container'] = n

# n = Namespace.where(institution: 'INHS Insect Collection', name: 'INHS drawer')
# if n.empty?
# n = Namespace.create(institution: 'INHS Insect Collection', name: 'INHS drawer', short_name: 'D')
# else
# n = n.first
# end
# data.namespaces['dry'] = n

# n = Namespace.where(institution: 'INHS Insect Collection', name: 'INHS vial rack')
# if n.empty?
# n = Namespace.create(institution: 'INHS Insect Collection', name: 'INHS vial rack', short_name: 'R')
# else
# n = n.first
# end
# data.namespaces['wet'] = n

# n = Namespace.where(institution: 'INHS Insect Collection', name: 'INHS slide box')
# if n.empty?
# n = Namespace.create(institution: 'INHS Insect Collection', name: 'INHS slide box', short_name: 'S')
# else
# n = n.first
# end
# data.namespaces['slide'] = n

data.namespaces.merge!(taxon_namespace: @taxon_namespace)
data.namespaces.merge!(accession_namespace: @accession_namespace)
end
Expand Down Expand Up @@ -615,9 +572,9 @@ namespace :tw do

# from handle taxa
data.keywords.merge!(
'Taxa:TaxonCode' => Predicate.create(name: 'TaxonCode', definition: 'The verbatim value on import from INHS FileMaker database for Taxa#TaxonCode.'),
'Taxa:Synonyms' => Predicate.create(name: 'Synonyms', definition: 'The verbatim value on import from INHS FileMaker database for Taxa#Synonyms.'),
'Taxa:References' => Predicate.create(name: 'References', definition: 'The verbatim value on import INHS FileMaker database for Taxa#References.')
'TaxonCode' => Predicate.create(name: 'TaxonCode', definition: 'The verbatim value on import from INHS FileMaker database for Taxa#TaxonCode.'),
'Synonyms' => Predicate.create(name: 'Synonyms', definition: 'The verbatim value on import from INHS FileMaker database for Taxa#Synonyms.'),
'References' => Predicate.create(name: 'References', definition: 'The verbatim value on import INHS FileMaker database for Taxa#References.')
)

# from handle people
Expand Down Expand Up @@ -1648,12 +1605,12 @@ namespace :tw do
object = nil
subject = nil

unless row['Prefix'].blank? || row['CatalogNumber'].blank?
identifier = Identifier.where(cached: row['Prefix'] + ' ' + row['CatalogNumber'], type: 'Identifier::Local::CatalogNumber', project_id: $project_id)
if !row['Prefix'].blank? && !row['CatalogNumber'].blank?
identifier = Identifier.where(cached: 'INHS ' + row['Prefix'] + ' ' + row['CatalogNumber'], type: 'Identifier::Local::CatalogNumber', project_id: $project_id)
specimen = identifier.empty? ? nil : identifier.first.identifier_object
end
unless row['AssociatedPrefix'].blank? || row['AssociatedCatalogNumber'].blank?
identifier = Identifier.where(cached: row['AssociatedPrefix'] + ' ' + row['AssociatedCatalogNumber'], type: 'Identifier::Local::CatalogNumber', project_id: $project_id)
if !row['AssociatedPrefix'].blank? && !row['AssociatedCatalogNumber'].blank?
identifier = Identifier.where(cached: 'INHS ' + row['AssociatedPrefix'] + ' ' + row['AssociatedCatalogNumber'], type: 'Identifier::Local::CatalogNumber', project_id: $project_id)
related_specimen = identifier.empty? ? nil : identifier.first.identifier_object
end
if !row['AssociatedTaxonCode'].blank? && related_specimen.nil?
Expand Down Expand Up @@ -1827,7 +1784,7 @@ namespace :tw do
total = data.loan_invoice_speciments[row['CatalogNumber']]['Total']
else
loan_item_object = Identifier.where(
cached: row['Prefix'] + ' ' + row['CatalogNumber'],
cached: 'INHS ' + row['Prefix'] + ' ' + row['CatalogNumber'],
type: 'Identifier::Local::CatalogNumber',
project_id: $project_id,
identifier_object_type: 'CollectionObject'
Expand Down

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