Skip to content
Laboratory protocols used by the Metabolite Chemistry Analysis Center, a ChEM-H Knowledge Center at Stanford University.
Jupyter Notebook
Branch: master
Clone or download
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Permalink
Type Name Latest commit message Commit time
Failed to load latest commit information.
changing_ion_sources
installation
instrument_maintenace_and_configuration
reference_material
sample_preparation
software
.gitignore
LICENSE
README.md
start_6470_lcms_run_protocol.md
start_6545_lcms_run_protocol.md

README.md

Stanford ChEM-H MCAC Protocols

This repository contains laboratory protocols for operating mass spectrometers in Stanford's ChEM-H Metabolic Chemistry Analysis Center. The protocols are formatted in markdown (*.md) format for easy manipulation and pretty display on GitHub.

Organization

Protocols are loosely organized into sub-directories.

  1. The two most commonly used protocols -- for starting runs -- are in the root directory:

  2. instrument_maintenace_and_configuration is a subdirectory for protocols on periodic maintenance, instrument reconfiguration, column cleaning, the composition of the tuning mix etc.

  3. sample_preparation is a subdir for prepping samples.

  4. changing_ion_sources is a subdir for how to swap out one ion source (e.g. dual AJS) for another (e.g. MMI).

  5. installation is a subdir containing tales of woe and caution related to the installation of mass spectrometers.

  6. software is a subdir containing protocols for how to set up metabolomics software on your own local computer.

You can’t perform that action at this time.