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docs: SC/21---Use hyperlinks rather than footnotes for links.
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Also use texttt for URLs.
(cherry picked from commit f584ed1)
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MalcolmCurrie committed Sep 17, 2012
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Expand Up @@ -475,8 +475,9 @@ \subsection{\xlabel{using_guide}This Cookbook}
\smurf \cite{smurf}, \Kappa \cite{kappa}, \gaia \cite{gaia} and \picard
\cite{picard}. This guide is {\em not} aimed at users of the
polarimeter (POL-2) or Fourier transform spectrometer (FTS-2). If you
have shared risk data (SRO) you should refer to the SMURF SRO
Cookbook\footnote{http://www.starlink.ac.uk/docs/sc19.htx/sc19.html}.
have shared risk data (SRO) you should refer to the
\xref{SMURF SRO
Cookbook.}{sc19}{}\latex{\footnote{\texttt{http://www.starlink.ac.uk/docs/sc19.htx/sc19.html}}}

A brief description of the instrument and the observing modes is given
in Section~\ref{sec:s2}. Details on data acquisition and instructions
Expand Down Expand Up @@ -522,10 +523,11 @@ \subsection{\xlabel{computing}Before you start: Computing resources}
environment variable to restrict each map-maker to half the available
cores.

An alternative option is to download your reduced data from the JCMT
Science Archive at
CADC\footnote{http://www3.cadc-ccda.hia-iha.nrc-cnrc.gc.ca/jcmt/}. See
Section~\ref{sec:pipe} for details on the science pipeline and
An alternative option is to download your reduced data from the
\htmladdnormallink{JCMT Science Archive at
CADC.}{http://www3.cadc-ccda.hia-iha.nrc-cnrc.gc.ca/jcmt/}
\latex{\footnote{\texttt{http://www3.cadc-ccda.hia-iha.nrc-cnrc.gc.ca/jcmt/}}}
See Section~\ref{sec:pipe} for details on the science pipeline and
retrieving your data from CADC.

\subsection{\xlabel{software}Before you start: Software}
Expand Down Expand Up @@ -756,9 +758,11 @@ \section{\xlabel{data_files}Raw SCUBA-2 Data}
\vspace{-2mm}
The \param{SEQ\_TYPE} parameter in the FITS header may be used to
identify the nature of each scan (see Section~\ref{sec:fitsheader}).
When you access you data either at
the JCMT or by downloading from the Science
Archive\footnote{http://www3.cadc-ccda.hia-iha.nrc-cnrc.gc.ca/jcmt/}
When you access you data either at the JCMT or by downloading from the
\htmladdnormallink{Science Archive}{http://www3.cadc-ccda.hia-iha.nrc-cnrc.gc.ca/jcmt/}
\begin{latexonly}
\footnote{http://www3.cadc-ccda.hia-iha.nrc-cnrc.gc.ca/jcmt/}
\end{latexonly}
you will get \emph{all} of the files listed above. Later when you
reduce your data using the map-maker you will include \emph{all} of
the files (noise + flat-fields + science).
Expand Down Expand Up @@ -1093,9 +1097,16 @@ \subsection{\xlabel{clean}Notes on cleaning your data}
the pre-processing stage. The commands for manually cleaning your data
are given in Appendix~\ref{app:clean}.

% Split to avoid paragraph break mid-sentence.
\begin{htmlonly}
You can also check out the \xref{SMURF SRO Cookbook}{sc19}{} which
goes into great depth on the data cleaning options.
\end{htmlonly}
\begin{latexonly}
You can also check out the SMURF SRO
Cookbook\footnote{http://www.starlink.ac.uk/docs/sc19.htx/sc19.html}
Cookbook{\footnote{http://www.starlink.ac.uk/docs/sc19.htx/sc19.html}}
which goes into great depth on the data cleaning options.
\end{latexonly}


\subsection{\xlabel{calcnoise}Checking the array performance}
Expand Down Expand Up @@ -2880,8 +2891,9 @@ \subsection{\xlabel{Cosmology}Deep point-source maps}
\end{itemize}

\textbf{Note:} A \picard\ recipe dealing specifically with blank field
maps is under development. Follow the \emph{Pipelines and Archives
blog}\footnote{http://pipelinesandarchives.blogspot.com/} for all the
maps is under development. Follow the \htmladdnormallink{\emph{Pipelines and Archives
blog}}{http://pipelinesandarchives.blogspot.com/}
\latex{\footnote{http://pipelinesandarchives.blogspot.com/}} for all the
latest updates and releases.

\subsection{\xlabel{Galactic}Extended galactic sources}
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