autotools: recast STAR_INITIALISE_FORTRAN as STAR_INITIALISE_FORTRAN_RTL

Naming C macros the same as m4 ones is really tough sometimes so choose not to
do that

Other related changes with regenerated files and autoupdate suggested fixes

applications/gaia/configure.ac

@@ -7,12 +7,13 @@ dnl    run and gaia/configure, gaia3d/configure and gaiavo/configure
 dnl    scripts have been updated (this normally requires a bootstrap, 
 dnl    configure, bootstrap, the configure updates the local directories 
 dnl    which then require regenerating again).
-AC_INIT(gaia, 4.4-4, starlink@jiscmail.ac.uk)
+AC_INIT([gaia],[4.4-5],[starlink@jiscmail.ac.uk])
 
 dnl    Require autoconf-2.50 at least
-AC_PREREQ(2.50)
+AC_PREREQ([2.69])
 dnl    Require Starlink automake
-AM_INIT_AUTOMAKE(1.8.2-starlink)
+AM_INIT_AUTOMAKE([1.8.2-starlink])
+AC_CONFIG_MACRO_DIR([m4])
 
 dnl    Sanity-check: name a file in the source directory -- if this
 dnl    isn't found then configure will complain
@@ -21,7 +22,7 @@ AC_CONFIG_SRCDIR([gaia.news])
 dnl    Include defaults for Starlink configurations
 dnl    Option `per-package-dirs' means that executables and help files
 dnl    are installed in package-specific directories.
-STAR_DEFAULTS(per-package-dirs)
+STAR_DEFAULTS([per-package-dirs])
 
 dnl    Need to build an atask, depends on much the same as a full monolith.
 STAR_MONOLITHS
@@ -30,12 +31,12 @@ dnl    Find required versions of the programs we need for configuration
 AC_PROG_CC
 AC_PROG_CXX
 AC_PROG_FC
-AC_PROG_LIBTOOL
+LT_INIT
 
 dnl    We have a C++ main function, but we call Fortran.  This defines
 dnl    the cpp macro of the same name, which will do any 
 dnl    initialisation which is necessary with this platform/compiler.
-STAR_INITIALISE_FORTRAN
+STAR_INITIALISE_FORTRAN_RTL
 
 dnl    Sometimes also need to know the name of the Fortran MAIN.
 AC_FC_MAIN

applications/gaia/gaia/aclocal.m4

@@ -169,7 +169,7 @@ STAR_PRM_COMPATIBLE_SYMBOLS
 AC_PROG_FC
 AC_CHECK_PROGS(LIBTOOL,libtool)
 STAR_CHECK_PROGS([fgeneric])
-STAR_INITIALISE_FORTRAN
+STAR_INITIALISE_FORTRAN_RTL
 
 dnl Pre-C99 compilers do not support inline, check for that.
 AC_C_INLINE

applications/gaia/gaia/config.h.in

@@ -1,5 +1,8 @@
 /* config.h.in.  Generated from configure.in by autoheader.  */
 
+/* Define if building universal (internal helper macro) */
+#undef AC_APPLE_UNIVERSAL_BUILD
+
 /* Build windows export dll */
 #undef BUILD_gaia
 
@@ -113,13 +116,16 @@
 /* Define to the one symbol short name of this package. */
 #undef PACKAGE_TARNAME
 
+/* Define to the home page for this package. */
+#undef PACKAGE_URL
+
 /* Define to the version of this package. */
 #undef PACKAGE_VERSION
 
-/* The size of a `long', as computed by sizeof. */
+/* The size of `long', as computed by sizeof. */
 #undef SIZEOF_LONG
 
-/* The size of a `long long', as computed by sizeof. */
+/* The size of `long long', as computed by sizeof. */
 #undef SIZEOF_LONG_LONG
 
 /* Define to a function call which will initialise the Fortran RTL */
@@ -164,9 +170,22 @@
 /* Do we want to use the threaded memory allocator? */
 #undef USE_THREAD_ALLOC
 
-/* Define to 1 if your processor stores words with the most significant byte
-   first (like Motorola and SPARC, unlike Intel and VAX). */
-#undef WORDS_BIGENDIAN
+/* Define WORDS_BIGENDIAN to 1 if your processor stores words with the most
+   significant byte first (like Motorola and SPARC, unlike Intel). */
+#if defined AC_APPLE_UNIVERSAL_BUILD
+# if defined __BIG_ENDIAN__
+#  define WORDS_BIGENDIAN 1
+# endif
+#else
+# ifndef WORDS_BIGENDIAN
+#  undef WORDS_BIGENDIAN
+# endif
+#endif
+
+/* Enable large inode numbers on Mac OS X 10.5.  */
+#ifndef _DARWIN_USE_64_BIT_INODE
+# define _DARWIN_USE_64_BIT_INODE 1
+#endif
 
 /* Number of bits in a file offset, on hosts where this is settable. */
 #undef _FILE_OFFSET_BITS