step4_relprune.log

PLINK v2.00a2 SSE4.2 (21 Aug 2018)
Options in effect:
  --bfile step3_missing_filter
  --king-cutoff 0.177
  --make-bed
  --out step4_relprune

Working directory: /Users/chrchang/statpopgen/plink
Start time: Sun Aug 26 14:54:19 2018

Random number seed: 1535320459
16384 MiB RAM detected; reserving 8192 MiB for main workspace.
Using up to 8 compute threads.
1092 samples (567 females, 525 males; 1092 founders) loaded from
step3_missing_filter.fam.
230700 variants loaded from step3_missing_filter.bim.
Note: No phenotype data present.
--king-cutoff: Scanning for singletons and monomorphic variants... done.
22257 variants handled by initial scan.
--king-cutoff: 208443 variants processed.
--king-cutoff: Excluded sample IDs written to step4_relprune.king.cutoff.out.id
, and 1060 remaining sample IDs written to step4_relprune.king.cutoff.in.id .
Writing step4_relprune.bed ... done.
Writing step4_relprune.bim ... done.
Writing step4_relprune.fam ... done.

End time: Sun Aug 26 14:54:21 2018