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SBOL Utilities 1.0-alpha11

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@jakebeal jakebeal released this 05 Oct 20:08
· 382 commits to main since this release
1.0a11
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Early release of SBOL Utilities with four utilities:

  • graph-sbol uses graphviz to render the object tree in an SBOL Document.
  • excel-to-sbol extracts SBOL parts and libraries from an Excel file (an SBOL3 version of the SBOL2 Excel-to-SBOL utility)
  • sbol-expand-derivations searches through an SBOL file for CombinatorialDerivation objects and expands them to create a library of all of the specific constructs.
  • sbol-calculate-sequences attempts to calculate the sequence of any DNA Component that can be fully specified from the sequences of its sub-components.

In addition, for python users SBOL Utilities provides sequence and component packages to simplify common tasks with those types of objects.

This is a patch release handling updates in pySBOL3 1.0a8. Specifically:

  • Fix breaking changes from pySBOL3 1.0a7 to 1.0a8
  • Move id_sort from workarounds to helper_functions
  • Deprecate workarounds that are no longer needed
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