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@SynBioDex

Synthetic Biology Data Exchange Group

A group to coordinate the development of standards to facilitate data exchange in synthetic biology
README.md

Synthetic Biology Data Exchange Group

A group to coordinate the development of standards to facilitate data exchange in synthetic biology

As well as several software projects, this organization includes respositories containing information about the SBOL/SBOL Visual standards and their development.

SbolStandardWebsite is the repo from which http://www.sbolstandard.org/ is generated.

A summary of recent activity on the specification (rather than software) repos within the SynBioDex organization is generated by SynBioDex/activity-summaries and accessible at: https://synbiodex.github.io/activity-summaries/

SBOL

  • SBOL-specification: the SBOL Standard
  • SEPs: SBOL Enhancement Proposals - proposals for changes to the SBOL standard

SBOL Visual

SBOL and SBOL Visual

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  1. SBOL-specification SBOL-specification Public

    The Synthetic Biology Open Language (SBOL)

    TeX 19 9

  2. SBOL-visual SBOL-visual Public

    The reference implementation of the SBOL Visual standard

    HTML 34 16

  3. pySBOL3 pySBOL3 Public

    Native python implementation of SBOL 3.0 specification

    Python 39 17

  4. sboljs3 sboljs3 Public

    A library for the Synthetic Biology Open Language (SBOL) written in TypeScript, for JavaScript/TypeScript applications in the browser or node.js

    TypeScript 6 1

  5. SBOL-utilities SBOL-utilities Public

    Command-line utilities and scripts for manipulating SBOL data

    JavaScript 18 30

  6. SBOL-examples SBOL-examples Public

    A repository to share/discuss/ask/propose how to represent examples using SBOL and SBOLVisual.

    Jupyter Notebook 3 4

Repositories

Showing 10 of 56 repositories
  • SBOL-Validator Public

    A web application to validate SBOL files

    SynBioDex/SBOL-Validator’s past year of commit activity
    HTML 8 Apache-2.0 3 16 2 Updated May 17, 2025
  • SBOL-utilities Public

    Command-line utilities and scripts for manipulating SBOL data

    SynBioDex/SBOL-utilities’s past year of commit activity
    JavaScript 18 MIT 30 108 (2 issues need help) 14 Updated May 15, 2025
  • Excel-to-SBOL Public
    SynBioDex/Excel-to-SBOL’s past year of commit activity
    Python 4 BSD-3-Clause 8 15 0 Updated May 15, 2025
  • SBOLCanvas Public
    SynBioDex/SBOLCanvas’s past year of commit activity
    HTML 14 Apache-2.0 6 28 0 Updated May 14, 2025
  • SBOL-examples Public

    A repository to share/discuss/ask/propose how to represent examples using SBOL and SBOLVisual.

    SynBioDex/SBOL-examples’s past year of commit activity
    Jupyter Notebook 3 Apache-2.0 4 17 1 Updated May 7, 2025
  • SBOL-Notebooks Public

    A repository containing Jupyter Notebooks for SBOL

    SynBioDex/SBOL-Notebooks’s past year of commit activity
    Jupyter Notebook 0 1 17 5 Updated May 7, 2025
  • SBOL-Converter Public

    SBOL Java Converter

    SynBioDex/SBOL-Converter’s past year of commit activity
    Java 0 Apache-2.0 0 7 0 Updated Apr 25, 2025
  • libSBOLj3 Public Forked from goksel/libSBOLj3_moved_to_SynBioDex

    A Java library for the Synthetic Biology Open Language version 3

    SynBioDex/libSBOLj3’s past year of commit activity
    Java 1 Apache-2.0 3 4 0 Updated Apr 25, 2025
  • libSBOLj Public

    Java Library for Synthetic Biology Open Language (SBOL)

    SynBioDex/libSBOLj’s past year of commit activity
    Java 39 Apache-2.0 25 64 7 Updated Apr 17, 2025
  • Xperimental-Data-Connector Public Forked from SynBioDex/Excel-to-SBOL

    XDC uses excel2flapjack and excel2sbol and interlinks the data

    SynBioDex/Xperimental-Data-Connector’s past year of commit activity
    Python 2 BSD-3-Clause 8 6 1 Updated Apr 16, 2025
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