Skip to content

SBOL Utilities 1.0-alpha12

Pre-release
Pre-release
Compare
Choose a tag to compare
@jakebeal jakebeal released this 28 Oct 20:58
· 351 commits to main since this release
1.0a12
2e1855d
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.

This release of SBOL Utilities includes the following utilities:

  • graph-sbol uses graphviz to render the object tree in an SBOL Document.
  • excel-to-sbol extracts SBOL parts and libraries from an Excel file (an SBOL3 version of the SBOL2 Excel-to-SBOL utility)
  • sbol-expand-derivations searches through an SBOL file for CombinatorialDerivation objects and expands them to create a library of all of the specific constructs.
  • sbol-calculate-sequences attempts to calculate the sequence of any DNA Component that can be fully specified from the sequences of its sub-components.
  • sbol-converter converts between any of the SBOL3, SBOL2, GenBank, and FASTA formats.
  • sbol-diff computes and reports the difference between two SBOL3 documents.

In addition, for python users SBOL Utilities provides sequence and component packages to simplify common tasks with those types of objects.

New this release:

  • sbol-converter and sbol-diff utilities
  • Online conversion tools are not used by default: user must explicitly decide to expose information
  • Correction of bugs related to whitespace and namespace assignment in excel-to-sbol
Assets 2