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SBOL Utilities 1.0-alpha16

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@jakebeal jakebeal released this 16 Jun 14:00
· 210 commits to main since this release
1.0a16
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This release of SBOL Utilities includes the following utilities:

  • graph-sbol uses graphviz to render the object tree in an SBOL Document.
  • excel-to-sbol extracts SBOL parts and libraries from an Excel file (an SBOL3 version of the SBOL2 Excel-to-SBOL utility)
  • sbol-expand-derivations searches through an SBOL file for CombinatorialDerivation objects and expands them to create a library of all of the specific constructs.
  • sbol-calculate-sequences attempts to calculate the sequence of any DNA Component that can be fully specified from the sequences of its sub-components.
  • sbol-converter converts between any of the SBOL3, SBOL2, GenBank, and FASTA formats.
  • sbol-diff computes and reports the difference between two SBOL3 documents.

In addition, for python users SBOL Utilities provides sequence and component packages to simplify common tasks with those types of objects.

New in this release:

  • Fix for local conversion on Windows
  • Additional utilities in the component package
  • Add with cached_references(doc) form to accelerate lookups
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