Merge pull request #28 from SynBioDex/develop

SBOL Visual 2.0 in release state

.gitignore

@@ -1 +1,29 @@
-.DS_Store
+.DS_Store
+
+## python notebooks
+##########
+.ipynb_checkpoints
+
+######################
+# Windows
+######################
+# Windows image file caches
+Thumbs.db
+
+# Folder config file
+Desktop.ini
+######################
+# Mac OSX
+######################
+.DS_Store
+.svn
+**.DS_Store
+**.svn
+
+#####################
+# Office files
+#####################
+**.xlsx
+**.xls
+**.doc
+

Glyphs/FunctionalComponents/complex/README.md

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+# Complex
+
+## Associated BioPAX term(s)
+Complex: http://www.biopax.org/release/biopax-level3.owl#Complex
+
+## Recommended Glyph and Alternates
+The RECOMMENDED glyph for a complex is a composite of the glyphs for the molecules of comprising the complex.  For example, a protein bound to a small molecule, a guide RNA, or another protein:
+
+![glyph specification](complex-ps-specification.png)
+![glyph specification](complex-pr-specification.png)
+![glyph specification](complex-pp-specification.png)
+
+An alternative is the SBGN "cornered rectangle" glyph for a complex:
+
+![glyph specification](complex-sbgn-specification.png)
+
+## Prototypical Example
+
+Arabinose bound to AraC
+
+## Notes
+*This section left intentionally blank*