Update Introduction and Skylines tutorials (files changed and metadat…

…a needed to be rebuilt)
Taming-the-BEAST · Jun 12, 2023 · e7b98d9 · e7b98d9
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diff --git a/tutorials/Introduction-to-BEAST2/Introduction-to-BEAST2.aux b/tutorials/Introduction-to-BEAST2/Introduction-to-BEAST2.aux
diff --git a/tutorials/Introduction-to-BEAST2/Introduction-to-BEAST2.pdf b/tutorials/Introduction-to-BEAST2/Introduction-to-BEAST2.pdf
diff --git a/tutorials/Introduction-to-BEAST2/Introduction-to-BEAST2.tex b/tutorials/Introduction-to-BEAST2/Introduction-to-BEAST2.tex
diff --git a/tutorials/Introduction-to-BEAST2/LICENSE.html b/tutorials/Introduction-to-BEAST2/LICENSE.html
diff --git a/tutorials/Introduction-to-BEAST2/figures/beast.png b/tutorials/Introduction-to-BEAST2/figures/beast.png
diff --git a/tutorials/Introduction-to-BEAST2/figures/beast_out.png b/tutorials/Introduction-to-BEAST2/figures/beast_out.png
diff --git a/tutorials/Introduction-to-BEAST2/figures/calibration.png b/tutorials/Introduction-to-BEAST2/figures/calibration.png
diff --git a/tutorials/Introduction-to-BEAST2/figures/clone.png b/tutorials/Introduction-to-BEAST2/figures/clone.png
diff --git a/tutorials/Introduction-to-BEAST2/figures/data.png b/tutorials/Introduction-to-BEAST2/figures/data.png
diff --git a/tutorials/Introduction-to-BEAST2/figures/link.png b/tutorials/Introduction-to-BEAST2/figures/link.png
diff --git a/tutorials/Introduction-to-BEAST2/figures/logs.png b/tutorials/Introduction-to-BEAST2/figures/logs.png
diff --git a/tutorials/Introduction-to-BEAST2/figures/priors.png b/tutorials/Introduction-to-BEAST2/figures/priors.png
diff --git a/tutorials/Introduction-to-BEAST2/figures/substitution.png b/tutorials/Introduction-to-BEAST2/figures/substitution.png
diff --git a/tutorials/Introduction-to-BEAST2/figures/taxa.png b/tutorials/Introduction-to-BEAST2/figures/taxa.png
diff --git a/tutorials/Introduction-to-BEAST2/figures/treeannot.png b/tutorials/Introduction-to-BEAST2/figures/treeannot.png
diff --git a/tutorials/Introduction-to-BEAST2/index.html b/tutorials/Introduction-to-BEAST2/index.html
diff --git a/tutorials/Introduction-to-BEAST2/preamble.tex b/tutorials/Introduction-to-BEAST2/preamble.tex
@@ -238,3 +238,6 @@
     \rlap{\hbox to \wd0{\hss{$\textcolor{lg}{\newmoon}$}\hss}}\box0
 }}
 
+% passthrough command for Pandoc combined with \lst
+\newcommand{\passthrough}[1]{#1}
+
diff --git a/tutorials/Introduction-to-BEAST2/precooked_runs/Primates.MCC.tree b/tutorials/Introduction-to-BEAST2/precooked_runs/Primates.MCC.tree
@@ -3,17 +3,17 @@
 Begin taxa;
 	Dimensions ntax=12;
 		Taxlabels
-			Gorilla 
-			Homo_sapiens 
-			Hylobates 
-			Lemur_catta 
-			M._fascicularis 
-			M._mulatta 
-			M._sylvanus 
-			Macaca_fuscata 
-			Pan 
-			Pongo 
-			Saimiri_sciureus 
+			Gorilla
+			Homo_sapiens
+			Hylobates
+			Lemur_catta
+			M._fascicularis
+			M._mulatta
+			M._sylvanus
+			Macaca_fuscata
+			Pan
+			Pongo
+			Saimiri_sciureus
 			Tarsius_syrichta
 			;
 End;
@@ -32,5 +32,5 @@ Begin trees;
 		  11 Saimiri_sciureus,
 		  12 Tarsius_syrichta
 ;
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 End;