Version corresponding to final manuscript

This release corresponds to the code used to produce the results and figures in the final manuscript and the associated data and output files.

Version info: Code run in R version 3.3.2 (2016-10-31)
Using: Rstudio version 1.1.383
On: 2017-12-18
With: GGally 1.3.2; bindrcpp 0.2; cowplot 0.8.0; scales 0.5.0; gridExtra 2.3; knitr 1.17; Hmisc 4.0.3; Formula 1.2.2; survival 2.41.3; lattice 0.20.34; RColorBrewer 1.1.2; ggplot2 2.2.1; readxl 1.0.0; tidyr 0.7.2; dplyr 0.7.4

Version corresponding to submitted manuscript

This release corresponds to the code used for all the analysis, results, and figures for the submitted manuscript
"Undiagnosed HIV infections among gay and biz=sexual men increasingly contribute to new infections in Australia"

Version info: Code run in R version 3.3.2 (2016-10-31)
Using: Rstudio version 1.0.44
On: 2017-06-02
With: dplyr 0.5.0; tidyr 0.6.1; ggplot2 2.2.1; markdown 0.7.7; cowplot 0.7.0; gridExtra 2.2.1;