Integration of CI/CD practices #2
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…ple OpenMP runtime library issue
fercer
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May 8, 2024
commit 7a5434f08a361e19df8997496fd4d6cac400ee66
Author: Fernando Cervantes Sanchez <iie.fercer@gmail.com>
Date: Wed May 8 10:50:25 2024 -0400
Created documentation from source
commit 6ff5f6239ddb89b5ff8228a956e3ca646fe34465
Merge: dd6a056 4afb0bd
Author: Fernando Cervantes Sanchez <iie.fercer@gmail.com>
Date: Wed May 8 10:47:32 2024 -0400
Merge branch 'main' into gh-pages-dev
commit dd6a0562351c8554ad7d31dcf41f16eb9ad5e6c7
Author: Fernando Cervantes Sanchez <iie.fercer@gmail.com>
Date: Wed May 8 10:46:43 2024 -0400
Added example for PatchSampler for inference
commit 77311f42a0c7e74345f6a743ae4e1d5f5e5c16b6
Merge: 861fe51 fb57026
Author: Fernando Cervantes Sanchez <iie.fercer@gmail.com>
Date: Tue May 7 17:21:45 2024 -0400
Merge branch 'main' into gh-pages-dev
commit 4afb0bd
Author: Fernando Cervantes Sanchez <iie.fercer@gmail.com>
Date: Tue May 7 17:01:57 2024 -0400
Added example notebook to documentation
commit 0f1d718
Author: Fernando Cervantes Sanchez <iie.fercer@gmail.com>
Date: Tue May 7 16:32:16 2024 -0400
Standardized patch sampling method to handle smaller and bigger mask scales than image scale
commit 61995e2
Author: Fernando Cervantes Sanchez <iie.fercer@gmail.com>
Date: Thu May 2 15:59:57 2024 -0400
Fixed patch slices generation in PatchSampler to always retrieve patches of the defined shape
commit 784906f
Author: Fernando Cervantes Sanchez <iie.fercer@gmail.com>
Date: Thu May 2 10:38:54 2024 -0400
Added tests for stride and pad parameters of PatchSampler class
commit 149cfc2
Author: Fernando Cervantes Sanchez <iie.fercer@gmail.com>
Date: Wed May 1 16:26:04 2024 -0400
Padding and stride added to PatchSampler and ImageBase classes to allow overlapping patches extraction
commit 0de4ad1
Author: Fernando Cervantes Sanchez <iie.fercer@gmail.com>
Date: Tue Apr 30 10:51:24 2024 -0400
Fixed missing patches from chunks smaller than the input image chunk size
commit bf8aae6
Author: Fernando Cervantes Sanchez <iie.fercer@gmail.com>
Date: Fri Apr 5 11:55:35 2024 -0400
Fixed spatial chunk size computation when patch sizes are grater than the chunk size
commit 3a53ef5
Author: Fernando Cervantes Sanchez <iie.fercer@gmail.com>
Date: Fri Mar 29 16:46:02 2024 -0400
Reverted change in the computation when masks elements are relative smaller than patch sizes
commit 43c2942
Author: Fernando Cervantes Sanchez <iie.fercer@gmail.com>
Date: Fri Mar 29 14:46:38 2024 -0400
Changed PatchSampler to take as base the patche size instead of the input image's chunk sizes
commit fb57026
Author: Fernando Cervantes Sanchez <iie.fercer@gmail.com>
Date: Fri Oct 6 14:04:50 2023 -0400
Integration of CI/CD practices (#2)
* Integration CI/CD pipeline to this project
* Corrected github actions test workflow
* Install the package before test it
* Created empty __init__.py inside tests to record coverage
* Changed name of sample_images_generator.py to utils.py for clarity
* Updated test workflow to use a non-supported workaround for the multiple OpenMP runtime library issue
* Updated test workflow to report coverage
* Moved non-pytorch compatibility test to last position
* Added test for datasets with zero expected samples
fercer
added a commit
that referenced
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Aug 29, 2024
* Integration of CI/CD practices (#2) * Integration CI/CD pipeline to this project * Corrected github actions test workflow * Install the package before test it * Created empty __init__.py inside tests to record coverage * Changed name of sample_images_generator.py to utils.py for clarity * Updated test workflow to use a non-supported workaround for the multiple OpenMP runtime library issue * Updated test workflow to report coverage * Moved non-pytorch compatibility test to last position * Added test for datasets with zero expected samples * Changed PatchSampler to take as base the patche size instead of the input image's chunk sizes * Reverted change in the computation when masks elements are relative smaller than patch sizes * Fixed spatial chunk size computation when patch sizes are grater than the chunk size * Fixed missing patches from chunks smaller than the input image chunk size * Padding and stride added to PatchSampler and ImageBase classes to allow overlapping patches extraction * Added tests for stride and pad parameters of PatchSampler class * Fixed patch slices generation in PatchSampler to always retrieve patches of the defined shape * Standardized patch sampling method to handle smaller and bigger mask scales than image scale * Added example notebook to documentation * Fix offset (#8) * Changed PatchSampler to take as base the patche size instead of the input image's chunk sizes * Reverted change in the computation when masks elements are relative smaller than patch sizes * Fixed spatial chunk size computation when patch sizes are grater than the chunk size * Fixed missing patches from chunks smaller than the input image chunk size * Padding and stride added to PatchSampler and ImageBase classes to allow overlapping patches extraction * Added tests for stride and pad parameters of PatchSampler class * Fixed patch slices generation in PatchSampler to always retrieve patches of the defined shape * Standardized patch sampling method to handle smaller and bigger mask scales than image scale * Added example notebook to documentation * Fixed incorrect sampling of patches on masked regions * Updated documentation for version 0.0.2 * Updated tests/utils.py to use an example image from a public S3 bucket
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