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@TheNoyesLab

TheNoyesLab

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  1. ASM-Microbe-2022 ASM-Microbe-2022 Public

    R 3

  2. WGS_SNP_pipelines WGS_SNP_pipelines Public

    Collection of SNP pipelines to analyze assembled genomes

    Groovy 1 3

  3. NoyesLab_R_analysis_Jupyter_notebook NoyesLab_R_analysis_Jupyter_notebook Public

    Forked from EnriqueDoster/MEG_R_metagenomic_analysis

    R code to combine microbiome (Qiime2/kraken2) and resistome (AMR++) results for analysis with metagenomeSeq.

    Jupyter Notebook 1

  4. Bovine_Milk_Microbiome Bovine_Milk_Microbiome Public

    R 1 1

  5. cyverse-microbiome cyverse-microbiome Public

    Microbiome dockerfile for integration within Cyverse's Discovery Environment

    Dockerfile

  6. Script_development Script_development Public

    Repository for developing useful bioinformatic scripts

    Python 2

Repositories

Showing 10 of 19 repositories
  • OREI_Shotgun_AMR Public
    TheNoyesLab/OREI_Shotgun_AMR’s past year of commit activity
    R 0 0 0 0 Updated Sep 17, 2024
  • Bovine_Milk_Microbiome Public
    TheNoyesLab/Bovine_Milk_Microbiome’s past year of commit activity
    R 1 1 0 0 Updated Jul 9, 2024
  • epi_on_the_island_2024 Public
    TheNoyesLab/epi_on_the_island_2024’s past year of commit activity
    Shell 0 0 0 0 Updated Jun 18, 2024
  • SNPCall_Benchmarking Public

    Repo for scripts and files used in benchmarking variant callers

    TheNoyesLab/SNPCall_Benchmarking’s past year of commit activity
    Shell 0 0 0 0 Updated Feb 19, 2024
  • zamra Public
    TheNoyesLab/zamra’s past year of commit activity
    Python 0 0 0 0 Updated Nov 13, 2023
  • Beef_calf_rumen Public

    Effect of castration timing and weaning strategy on the rumen metagenome of beef calves

    TheNoyesLab/Beef_calf_rumen’s past year of commit activity
    R 0 MIT 0 0 0 Updated Jul 8, 2023
  • TexasTech_FecalResistome Public

    Code repository for the Fecal Resistome Paper

    TheNoyesLab/TexasTech_FecalResistome’s past year of commit activity
    0 MIT 0 0 0 Updated Jul 7, 2023
  • 16S_shotgun_comparison Public

    Comparison of 16S rRNA gene sequencing

    TheNoyesLab/16S_shotgun_comparison’s past year of commit activity
    0 MIT 0 0 0 Updated May 23, 2023
  • Script_development Public

    Repository for developing useful bioinformatic scripts

    TheNoyesLab/Script_development’s past year of commit activity
    Python 0 MIT 2 0 2 Updated Sep 27, 2022
  • WGS-Foodborne-Analyses Public
    TheNoyesLab/WGS-Foodborne-Analyses’s past year of commit activity
    0 0 0 0 Updated Aug 26, 2022
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