Update to gradle 8.3, AnyEscapableString hierarchy #36
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vinjana
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Apr 5, 2024
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vinjana
commented
- ... mostly to fulfill requirement for GitHub CodeQL security scanning.
… security scanning. Signed-off-by: Philip R. Kensche <p.kensche@dkfz-heidelberg.de>
WalkthroughThe project has undergone a significant transformation to enhance its build system and testing environment. Major changes include the adoption of the CycloneDX BOM plugin and Changes
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Actionable comments posted: 0
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Files ignored due to path filters (1)
gradle/wrapper/gradle-wrapper.jaris excluded by!**/*.jar,!**/*.jar
Files selected for processing (5)
- build.gradle (2 hunks)
- gradle/wrapper/gradle-wrapper.properties (1 hunks)
- gradlew (2 hunks)
- gradlew.bat (4 hunks)
- src/test/groovy/de/dkfz/roddy/tools/DateTimeHelperTest.groovy (2 hunks)
Additional comments not posted (10)
gradle/wrapper/gradle-wrapper.properties (1)
3-5: Ensure compatibility of Gradle 8.3 with the project's existing setup and dependencies.build.gradle (3)
9-10: Verify the correct configuration and usage of the newly added plugins, especially the CycloneDX BOM plugin, to ensure they meet the project's requirements.
35-39: The shift toimplementationandtestImplementationscopes for dependencies is a good practice that enhances build performance and module encapsulation. Ensure all dependencies are correctly categorized.
51-65: Review the Maven publication configuration to ensure it aligns with the project's distribution goals, especially the updated JAR manifest attributes and artifact management settings.gradlew.bat (3)
1-14: The addition of licensing information enhances compliance and clarity. Ensure that the license is appropriate for the project's distribution terms.
37-37: Review the default JVM options to ensure they are appropriate for the project's build requirements, especially the memory limits.
28-29: The minor script adjustments, such as clearer variable assignments, enhance the script's readability and maintainability. Good job on these improvements.src/test/groovy/de/dkfz/roddy/tools/DateTimeHelperTest.groovy (1)
27-28: Review the impact of changing the expected time zones to "Europe/Berlin" on the project's global user base and test coverage to ensure it does not introduce biases or limitations.gradlew (2)
1-16: The addition of licensing information and detailed comments enhances compliance, clarity, and maintainability of thegradlewscript. Ensure that the license is appropriate for the project's distribution terms.
25-39: Test thegradlewscript on various operating systems to ensure its reliability and compatibility, especially in light of the adjustments for POSIX compliance.
Signed-off-by: Philip R. Kensche <p.kensche@dkfz-heidelberg.de>
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- build.gradle (2 hunks)
Additional comments not posted (5)
build.gradle (5)
9-10: Ensure CI/CD and local development setups are tested with the new plugin additions and changes.
18-24: Consider upgrading to a newer Java version for performance and security improvements, while ensuring compatibility with your project's requirements.
43-47: LGTM! The update to useimplementationandtestImplementationfor dependencies aligns with Gradle's recommendations.
50-70: Ensure that the URL and license information in the Maven publication setup are accurate and up-to-date.
78-83: LGTM! Including implementation details and the POM file in the JAR manifest is a good practice for artifact identification.
Signed-off-by: Philip R. Kensche <p.kensche@dkfz-heidelberg.de>
Signed-off-by: Philip R. Kensche <p.kensche@dkfz-heidelberg.de>
Signed-off-by: Philip R. Kensche <p.kensche@dkfz-heidelberg.de>
Signed-off-by: Philip R. Kensche <p.kensche@dkfz-heidelberg.de>
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Actionable comments posted: 2
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Files selected for processing (3)
- build.gradle (2 hunks)
- src/main/groovy/de/dkfz/roddy/tools/DateTimeHelper.groovy (1 hunks)
- src/test/groovy/de/dkfz/roddy/tools/DateTimeHelperTest.groovy (2 hunks)
Files skipped from review as they are similar to previous changes (1)
- src/test/groovy/de/dkfz/roddy/tools/DateTimeHelperTest.groovy
Additional comments not posted (4)
build.gradle (4)
8-10: The plugin version updates are appropriate and follow best practices for maintaining up-to-date dependencies.
43-47: The updates to dependency configurations are appropriate, ensuring compatibility and enhancing testing capabilities.
50-70: The enhancements to the Maven publication setup, including the addition of licensing information, are beneficial for project distribution and compliance.
78-83: Adding 'Implementation-Title' and 'Implementation-Version' attributes to the JAR manifest is a good practice for providing metadata about the implementation.
Signed-off-by: Philip R. Kensche <p.kensche@dkfz-heidelberg.de>
Signed-off-by: Philip R. Kensche <p.kensche@dkfz-heidelberg.de>
Signed-off-by: Philip R. Kensche <p.kensche@dkfz-heidelberg.de>
Signed-off-by: Philip R. Kensche <p.kensche@dkfz-heidelberg.de>
Signed-off-by: Philip R. Kensche <p.kensche@dkfz-heidelberg.de>
…branch Signed-off-by: Philip R. Kensche <p.kensche@dkfz-heidelberg.de>
vinjana
changed the title
Signed-off-by: Philip R. Kensche <p.kensche@dkfz-heidelberg.de>
Signed-off-by: Philip R. Kensche <p.kensche@dkfz-heidelberg.de>
Signed-off-by: Philip R. Kensche <p.kensche@dkfz-heidelberg.de>
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Actionable comments posted: 1
Outside diff range and nitpick comments (2)
src/main/groovy/de/dkfz/roddy/tools/RoddyIOHelperMethods.groovy (2)
42-42: Ensure consistent logging format.Consider including more context in the log message, such as the method name or parameters, to make debugging easier.
51-51: Ensure consistent logging format.Similar to the previous comment, consider enhancing the log message with additional context for better traceability.
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Files selected for processing (8)
- README.md (2 hunks)
- build.gradle (3 hunks)
- src/main/groovy/de/dkfz/roddy/core/InfoObject.java (1 hunks)
- src/main/groovy/de/dkfz/roddy/execution/io/LocalExecutionHelper.groovy (2 hunks)
- src/main/groovy/de/dkfz/roddy/tools/EscapableString.groovy (1 hunks)
- src/main/groovy/de/dkfz/roddy/tools/RoddyIOHelperMethods.groovy (4 hunks)
- src/test/groovy/de/dkfz/roddy/RoddyIOHelperMethodsTest.groovy (1 hunks)
- src/test/groovy/de/dkfz/roddy/tools/EscapableStringSpec.groovy (1 hunks)
Files skipped from review due to trivial changes (1)
- src/main/groovy/de/dkfz/roddy/core/InfoObject.java
Additional Context Used
LanguageTool (1)
README.md (1)
Near line 46: This word is normally spelled as one.
Context: ...chronousExecutionResult` - Patch: Use Circle-CI instead of Travis-CI * 2.3.0 - Mino...
Additional comments not posted (17)
README.md (2)
32-32: Ensure consistency in list item markers.
32-32: Add a space after the colon for better readability.build.gradle (5)
10-12: Updated plugin versions to support newer features and compatibility.
19-23: Configured Java toolchain to specify language version, enhancing compatibility and ensuring consistent builds across environments.
42-51: Updated dependencies to newer versions and switched toimplementationandtestImplementationfor better dependency management.
60-74: Enhanced Maven publication settings to include more metadata and licensing information, improving project documentation and compliance.
107-120: Introduced tasks for listing configurations and generating CycloneDX SBOMs, improving reporting and compliance with security standards.src/test/groovy/de/dkfz/roddy/tools/EscapableStringSpec.groovy (7)
13-23: Test cases for basic string operations without escaping are well-covered, ensuring correct behavior of theEscapableStringfunctionalities.
25-39: Comprehensive tests for string escaping and concatenation, including complex scenarios with nested concatenations.
41-49: Tests for string representation ensure that thetoStringmethods inEscapableStringclasses behave as expected.
51-74: Equality tests are thorough, covering various cases and ensuring that the equality operations are correctly implemented across different types ofEscapableString.
76-86: Tests for stacking escapes validate that multiple levels of escaping are handled correctly, an important feature for complex string manipulations.
88-104: Tests for simplifying nested concatenated strings are crucial for performance and correctness, ensuring that unnecessary nesting is efficiently reduced.
107-124: Tests for joining lists of escapable strings with different separators ensure flexibility and correctness in string manipulations.src/main/groovy/de/dkfz/roddy/execution/io/LocalExecutionHelper.groovy (1)
61-62: Improved error handling inexecuteSingleCommandby providing detailed error messages, which is crucial for debugging and user feedback.src/test/groovy/de/dkfz/roddy/RoddyIOHelperMethodsTest.groovy (1)
189-206: Added tests for converting symbolic to integer access rights, enhancing the test coverage for file permission handling.src/main/groovy/de/dkfz/roddy/tools/EscapableString.groovy (1)
14-242: Implemented a robust design using the Composite pattern for handling complex string operations, which enhances modularity and maintainability.
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| return "" |
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Handle exceptions more gracefully.
Currently, the method returns an empty string if no stack trace is available, which might mask the underlying issue. Consider throwing a custom exception or logging a warning to indicate the absence of a stack trace.
- else
- return ""
+ else {
+ logger.warning("Stack trace is unavailable for the exception.")
+ throw new IllegalStateException("Stack trace is unavailable.")
+ }Committable suggestion
‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation.
| else | |
| return "" | |
| else { | |
| logger.warning("Stack trace is unavailable for the exception.") | |
| throw new IllegalStateException("Stack trace is unavailable.") | |
| } |
