Tools to deal with dependencies in scripts, Rmd and packages
Clone or download
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Permalink
Type Name Latest commit message Commit time
Failed to load latest commit information.
R
img
inst
man
tests
vignettes
.Rbuildignore
.gitignore
.travis.yml
CODE_OF_CONDUCT.md
DESCRIPTION
LICENSE.md
NAMESPACE
NEWS.md
README.Rmd
README.md
appveyor.yml
attachment.Rproj
codecov.yml
devstuff_history.R

README.md

Travis build status Build status

attachment

The goal of attachment is to help to deal with package dependencies during package development. It also gives usefull tools to install or list missing packages used inside Rscripts or Rmds.

When building a package, we have to add @importFrom in our documentation or pkg::fun in the R code. The most important is not to forget to add the list of dependencies in the “Imports” or “Suggests” package lists in the DESCRIPTION file.

Why do you have to repeat twice the same thing ?
And what happens when you remove a dependency for one of your functions ? Do you really want to run a “Find in files” to verify that you do not need this package anymore ?

Let {attachment} help you ! This reads your NAMESPACE, your functions in R directory and your vignettes, then update the DESCRIPTION file accordingly. Are you ready to be lazy ?

Installation

# install.packages("devtools")
devtools::install_github("ThinkR-open/attachment")

Use package {attachment}

library(attachment)

What you really want is to fill and update your description file along with the modifications of your documentation. Indeed, only the following function will really be called. Use and abuse during the development of your package !

attachment::att_to_description()

To quickly install missing packages from a DESCRIPTION file, use:

attachment::install_from_description()

To quickly install missing packages needed to compile Rmd files or run Rscripts, use:

attachment::att_from_rmds(path = ".") %>% attachment::install_if_missing()

attachment::att_from_rscripts(path = ".") %>% attachment::install_if_missing()

Function attachment::create_dependencies_file() will create a dependencies.R file in inst/ directory. This R script contains the procedure to quickly install missing dependencies:

# No Remotes ----
# remotes::install_github("ThinkR-open/fcuk")
# Attachments ----
to_install <- c("covr", "desc", "devtools", "glue", "knitr", "magrittr", "rmarkdown", "stats", "stringr", "testthat", "utils")
for (i in to_install) {
  message(paste("looking for ", i))
  if (!requireNamespace(i)) {
    message(paste("     installing", i))
    install.packages(i)
  }
}

Of course, you can also use {attachment} out of a package to list all package dependencies of R scripts using att_from_rscripts or Rmd files using att_from_rmds.

dummypackage <- system.file("dummypackage", package = "attachment")

att_from_rscripts(path = dummypackage)
att_from_rmds(path = file.path(dummypackage,"vignettes"))

Vignette

Package {attachment} has a vignette to present the different functions available. There is also a recommandation to have a devstuff_history.R in the root directory of your package. (Have a look at devstuff_history.R in the present package)

vignette("fill-pkg-description", package = "attachment")

The vignette is available on the {pkgdown} page: https://thinkr-open.github.io/attachment/articles/fill-pkg-description.html

See full documentation realized using {pkgdown} at https://thinkr-open.github.io/attachment/

Please note that this project is released with a Contributor Code of Conduct. By participating in this project you agree to abide by its terms.