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Expand Modelling to Include Foregrounds #15

Merged
merged 69 commits into from
Apr 19, 2024
Merged

Expand Modelling to Include Foregrounds #15

merged 69 commits into from
Apr 19, 2024

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ThomasGesseyJones
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@ThomasGesseyJones
Add foreground model from Bevins et al. 2022
8d9935b
@ThomasGesseyJones
Add simulator for the foreground model
836d54f
@ThomasGesseyJones
Add foreground parameter to configuration file
85b3e72
@ThomasGesseyJones
Add foreground prior sampler generator code
4ae9b05
@ThomasGesseyJones
Add the foreground model to simulators
b291cea
@ThomasGesseyJones
Extend additive combiner to support an arbitrary number of simulators
811449e
@ThomasGesseyJones
Update meta data
4c2feca
@ThomasGesseyJones
Correct wording in train evidence network
7094e0d
@ThomasGesseyJones
Correct wording in visualize_forecast.py
d0f2dda
@ThomasGesseyJones
Add option for preprocessing simulated data in Evidence Network
f8152bb
@ThomasGesseyJones
Add log preprocessing to data now we have foregrounds and a large dyn…
e550977 
…amic range
@ThomasGesseyJones
Add the foreground model to Polychord verification
8291f86
@ThomasGesseyJones
Reduce verification data sets per model to 5 for testing
f59f4ab
@ThomasGesseyJones
Use SARAS 3 foreground posteriors as our priors (std increased by fac…
4179b64 
…tor of 1000)
@ThomasGesseyJones
Fix incorrect casting to list
ca37c9b
@ThomasGesseyJones
Decrease std enhancment factor to 100
62de3f4
@ThomasGesseyJones
Typo
9110ead
@ThomasGesseyJones
Change to a physically motivated foreground model
861a6fb
@ThomasGesseyJones
Correct wrong ndims being used
3d609f8
@ThomasGesseyJones
Typo
6758c14
@ThomasGesseyJones
Correct bug where prior sampler still sampling over components not be…
d43c5e1 
…ing modeled
@ThomasGesseyJones
Slicing more intelligently for greater reusability
30d830b
@ThomasGesseyJones
Add noise fitting for realism
883a764
@ThomasGesseyJones
Typo in printed output
6d043e3
@ThomasGesseyJones
Remove old figures
66c8f62
@ThomasGesseyJones
Increase verification simulation number
53f532d
@ThomasGesseyJones
Add missing docstring
caf6d24
@ThomasGesseyJones
Add scikit-learn to requirements
31be166
@ThomasGesseyJones
Preprocessing bugfixes
e0980f2
@ThomasGesseyJones
Add anesthetic as a requirement
db068ac
@ThomasGesseyJones
Remove high noise pre-run stage
f15eaa4
@ThomasGesseyJones
Remove fixed seed
9be7177
@ThomasGesseyJones
Increase to pick up clusters better
0fe9496
@ThomasGesseyJones
Adjust batch size for new nlive
7c4a6cf
@ThomasGesseyJones
Remove nlike tracking as not used
798b09e
@ThomasGesseyJones
Full verification set
c670f27
@ThomasGesseyJones
Add options for the whitening transform we use on the data
d085b9f
@ThomasGesseyJones
Merge branch 'foregrounds' of github.com:ThomasGesseyJones/FullyBayes…
ec0f7db 
…ianForecastsExample into foregrounds
@ThomasGesseyJones
Add new verification data
15bea13
@ThomasGesseyJones
Fixes to avoid overflow issues in blind coverage test
ec18896
@ThomasGesseyJones
Expand network and training set size as the classifying problem is no…
fb68756 
…w more challenging with forecasts
@ThomasGesseyJones
Restore outputs from earlier version (without foregrounds)
8cb8183
@ThomasGesseyJones
Rename old outputs to new file naming convention
97b33e1
@ThomasGesseyJones
Add old outputs back to repository for comparison
e8909bf
@ThomasGesseyJones
Remove file
55337f7
@ThomasGesseyJones
Store without foreground outputs in dedicated folders
fc504c0
@ThomasGesseyJones
Add Polychord verification data for with foregrounds model
17b227c
@ThomasGesseyJones
Limit predict batch size to avoid OOM errors
2448dab
@ThomasGesseyJones
Merge remote-tracking branch 'origin/foregrounds' into foregrounds
f7a10d2
@ThomasGesseyJones
Add timing data from polychord verification
f38147f
@ThomasGesseyJones
Add results for analysis with foregrounds
db693e1
@ThomasGesseyJones
Updated README.rst
138aff8
@ThomasGesseyJones
Add EN Bayes ratio estimates on verification data
98958cc
@ThomasGesseyJones
Add network
90e849c
@ThomasGesseyJones
Update comments and docstrings
05d902f
@ThomasGesseyJones
Update comments and docstrings
fa475ff
@ThomasGesseyJones
Reduce excessive number of blind coverage test samples
684d6c5
@ThomasGesseyJones
Add resubmission draft outputs and network
4290438
@ThomasGesseyJones ThomasGesseyJones merged commit c24fec3 into main Apr 19, 2024
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@ThomasGesseyJones ThomasGesseyJones deleted the foregrounds branch April 19, 2024 11:12
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