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Expand Modelling to Include Foregrounds #15

Merged
merged 69 commits into from
Apr 19, 2024
Merged

Expand Modelling to Include Foregrounds #15

merged 69 commits into from
Apr 19, 2024

Commits on Feb 10, 2024

  1. Add foreground model from Bevins et al. 2022

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    ThomasGesseyJones committed Feb 10, 2024
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  2. Add simulator for the foreground model

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    ThomasGesseyJones committed Feb 10, 2024
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Commits on Feb 13, 2024

  1. Add foreground parameter to configuration file

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    ThomasGesseyJones committed Feb 13, 2024
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  2. Add foreground prior sampler generator code

    @ThomasGesseyJones
    ThomasGesseyJones committed Feb 13, 2024
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  3. Add the foreground model to simulators

    @ThomasGesseyJones
    ThomasGesseyJones committed Feb 13, 2024
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  4. Extend additive combiner to support an arbitrary number of simulators

    @ThomasGesseyJones
    ThomasGesseyJones committed Feb 13, 2024
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  5. Update meta data

    @ThomasGesseyJones
    ThomasGesseyJones committed Feb 13, 2024
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  6. Correct wording in train evidence network

    @ThomasGesseyJones
    ThomasGesseyJones committed Feb 13, 2024
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  7. Correct wording in visualize_forecast.py

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    ThomasGesseyJones committed Feb 13, 2024
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  8. Add option for preprocessing simulated data in Evidence Network

    @ThomasGesseyJones
    ThomasGesseyJones committed Feb 13, 2024
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  9. Add log preprocessing to data now we have foregrounds and a large dyn… 

    …amic range
    @ThomasGesseyJones
    ThomasGesseyJones committed Feb 13, 2024
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  10. Add the foreground model to Polychord verification

    @ThomasGesseyJones
    ThomasGesseyJones committed Feb 13, 2024
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  11. Reduce verification data sets per model to 5 for testing

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    ThomasGesseyJones committed Feb 13, 2024
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  12. Use SARAS 3 foreground posteriors as our priors (std increased by fac… 

    …tor of 1000)
    @ThomasGesseyJones
    ThomasGesseyJones committed Feb 13, 2024
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Commits on Feb 14, 2024

  1. Fix incorrect casting to list

    @ThomasGesseyJones
    ThomasGesseyJones committed Feb 14, 2024
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Commits on Feb 17, 2024

  1. Decrease std enhancment factor to 100

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    ThomasGesseyJones committed Feb 17, 2024
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Commits on Feb 19, 2024

  1. Typo

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    ThomasGesseyJones committed Feb 19, 2024
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Commits on Feb 22, 2024

  1. Change to a physically motivated foreground model

    @ThomasGesseyJones
    ThomasGesseyJones committed Feb 22, 2024
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  2. Correct wrong ndims being used

    @ThomasGesseyJones
    ThomasGesseyJones committed Feb 22, 2024
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  3. Typo

    @ThomasGesseyJones
    ThomasGesseyJones committed Feb 22, 2024
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  4. Correct bug where prior sampler still sampling over components not be… 

    …ing modeled
    @ThomasGesseyJones
    ThomasGesseyJones committed Feb 22, 2024
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  5. Slicing more intelligently for greater reusability

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    ThomasGesseyJones committed Feb 22, 2024
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  6. Add noise fitting for realism

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    ThomasGesseyJones committed Feb 22, 2024
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Commits on Feb 23, 2024

  1. Typo in printed output

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    ThomasGesseyJones committed Feb 23, 2024
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  2. Remove old figures

    @ThomasGesseyJones
    ThomasGesseyJones committed Feb 23, 2024
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  3. Increase verification simulation number

    @ThomasGesseyJones
    ThomasGesseyJones committed Feb 23, 2024
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  4. Add missing docstring

    @ThomasGesseyJones
    ThomasGesseyJones committed Feb 23, 2024
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  5. Add scikit-learn to requirements

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    ThomasGesseyJones committed Feb 23, 2024
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Commits on Feb 25, 2024

  1. Preprocessing bugfixes

    @ThomasGesseyJones
    ThomasGesseyJones committed Feb 25, 2024
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  2. Add anesthetic as a requirement

    @ThomasGesseyJones
    ThomasGesseyJones committed Feb 25, 2024
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  3. Return to fixed noise, using high noise run to aid polychord convergence

    @ThomasGesseyJones
    ThomasGesseyJones committed Feb 25, 2024
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  4. Use PCA preprocessing function now using fixed noise

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    ThomasGesseyJones committed Feb 25, 2024
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  5. Modify training and testing to account for fixed noise

    @ThomasGesseyJones
    ThomasGesseyJones committed Feb 25, 2024
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Commits on Feb 26, 2024

  1. Fix non-assignment issue in MPI broadcasting

    @ThomasGesseyJones
    ThomasGesseyJones committed Feb 26, 2024
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  2. Flush prints

    @ThomasGesseyJones
    ThomasGesseyJones committed Feb 26, 2024
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  3. Correct all batches trying to run full set of verification models

    @ThomasGesseyJones
    ThomasGesseyJones committed Feb 26, 2024
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Commits on Feb 28, 2024

  1. Further correction to batching of verification simulations

    @ThomasGesseyJones
    ThomasGesseyJones committed Feb 28, 2024
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  2. clipnorm to improve stability

    @ThomasGesseyJones
    ThomasGesseyJones committed Feb 28, 2024
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  3. Testing settings for training

    @ThomasGesseyJones
    ThomasGesseyJones committed Feb 28, 2024
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  4. Change default noise level to 15 mK

    @ThomasGesseyJones
    ThomasGesseyJones committed Feb 28, 2024
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  5. Update to latest polychord

    @ThomasGesseyJones
    ThomasGesseyJones committed Feb 28, 2024
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  6. Remove high noise pre-run stage

    @ThomasGesseyJones
    ThomasGesseyJones committed Feb 28, 2024
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  7. Remove fixed seed

    @ThomasGesseyJones
    ThomasGesseyJones committed Feb 28, 2024
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  8. Increase to pick up clusters better

    @ThomasGesseyJones
    ThomasGesseyJones committed Feb 28, 2024
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  9. Adjust batch size for new nlive

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    ThomasGesseyJones committed Feb 28, 2024
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Commits on Feb 29, 2024

  1. Remove nlike tracking as not used

    @ThomasGesseyJones
    ThomasGesseyJones committed Feb 29, 2024
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  2. Full verification set

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    ThomasGesseyJones committed Feb 29, 2024
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Commits on Mar 1, 2024

  1. Add options for the whitening transform we use on the data

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    ThomasGesseyJones committed Mar 1, 2024
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  2. Merge branch 'foregrounds' of github.com:ThomasGesseyJones/FullyBayes… 

    …ianForecastsExample into foregrounds
    @ThomasGesseyJones
    ThomasGesseyJones committed Mar 1, 2024
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Commits on Mar 4, 2024

  1. Add new verification data

    @ThomasGesseyJones
    ThomasGesseyJones committed Mar 4, 2024
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  2. Fixes to avoid overflow issues in blind coverage test

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    ThomasGesseyJones committed Mar 4, 2024
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Commits on Mar 26, 2024

  1. Expand network and training set size as the classifying problem is no… 

    …w more challenging with forecasts
    @ThomasGesseyJones
    ThomasGesseyJones committed Mar 26, 2024
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  2. Restore outputs from earlier version (without foregrounds)

    @ThomasGesseyJones
    ThomasGesseyJones committed Mar 26, 2024
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  3. Rename old outputs to new file naming convention

    @ThomasGesseyJones
    ThomasGesseyJones committed Mar 26, 2024
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  4. Add old outputs back to repository for comparison

    @ThomasGesseyJones
    ThomasGesseyJones committed Mar 26, 2024
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  5. Remove file

    @ThomasGesseyJones
    ThomasGesseyJones committed Mar 26, 2024
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  6. Store without foreground outputs in dedicated folders

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    ThomasGesseyJones committed Mar 26, 2024
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Commits on Mar 27, 2024

  1. Add Polychord verification data for with foregrounds model

    @ThomasGesseyJones
    ThomasGesseyJones committed Mar 27, 2024
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Commits on Apr 8, 2024

  1. Limit predict batch size to avoid OOM errors

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    ThomasGesseyJones committed Apr 8, 2024
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  2. Merge remote-tracking branch 'origin/foregrounds' into foregrounds

    @ThomasGesseyJones
    ThomasGesseyJones committed Apr 8, 2024
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Commits on Apr 11, 2024

  1. Add timing data from polychord verification

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    ThomasGesseyJones committed Apr 11, 2024
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Commits on Apr 12, 2024

  1. Add results for analysis with foregrounds

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    ThomasGesseyJones committed Apr 12, 2024
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  2. Updated README.rst

    @ThomasGesseyJones
    ThomasGesseyJones committed Apr 12, 2024
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  3. Add EN Bayes ratio estimates on verification data

    @ThomasGesseyJones
    ThomasGesseyJones committed Apr 12, 2024
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  4. Add network

    @ThomasGesseyJones
    ThomasGesseyJones committed Apr 12, 2024
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  5. Update comments and docstrings

    @ThomasGesseyJones
    ThomasGesseyJones committed Apr 12, 2024
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  6. Update comments and docstrings

    @ThomasGesseyJones
    ThomasGesseyJones committed Apr 12, 2024
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  7. Reduce excessive number of blind coverage test samples

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    ThomasGesseyJones committed Apr 12, 2024
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Commits on Apr 19, 2024

  1. Add resubmission draft outputs and network

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    ThomasGesseyJones committed Apr 19, 2024
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