data for 3 - 5

individual_test_info/3/trial_data_3.yaml

@@ -1,32 +1,17 @@
-id: #ID number of the test
+id: 3 #ID number of the test
 trials: 
   -
-    type: # type of trial. e.g. "molecular" or "serology igm" or "serology igg"
-	  n_total: # total number of patients in clinical trial
-	  n_pos: # number of patients in clinical trial with sars-cov-2
-	  n_neg: # number of patients in clinical trial without sars-cov-2
-	  tp: # number of patients with sars-cov-2 that got a positive result
-	  fp: # number of patients without sars-cov-2 that got a positive result
-	  tn: # number of patiens without sars-cov-2 that got a negative result
-	  fn: # number of patiens with sars-cov-2 that got a positive result
-	  reported_sensitivity_point: # reported sensitivity or positive percent agreement point estimate
-	  reported_sensitivity_95ci_low: # reported sensitivity low point of 95% CI
-	  reported_sensitivity_95ci_high: # reported sensitivity high point of 95% CI
-	  reported_specificity_point: # reported specificity or negative percent agreement point estimate
-	  reported_specificity_95ci_low: # reported specificity low point of 95% CI
-	  reported_specificity_95ci_high: # reported specificity high point of 95% CI
-  -
-    type:
-	  n_total:
-	  n_pos:
-	  n_neg:
-	  tp:
-	  fp:
-	  tn:
-	  fn:
-	  reported_sensitivity_point:
-	  reported_sensitivity_95ci_low:
-	  reported_sensitivity_95ci_high:
-	  reported_specificity_point:
-	  reported_specificity_95ci_low:
-	  reported_specificity_95ci_high:
+    type: molecular # type of trial. e.g. "molecular" or "serology igm" or "serology igg"
+	  n_total: 150 # total number of patients in clinical trial
+	  n_pos: 50 # number of patients in clinical trial with sars-cov-2
+	  n_neg: 100 # number of patients in clinical trial without sars-cov-2
+	  tp: 50 # number of patients with sars-cov-2 that got a positive result
+	  fp: 0 # number of patients without sars-cov-2 that got a positive result
+	  tn: 100 # number of patiens without sars-cov-2 that got a negative result
+	  fn: 0 # number of patiens with sars-cov-2 that got a positive result
+	  reported_sensitivity_point: 1 # reported sensitivity or positive percent agreement point estimate
+	  reported_sensitivity_95ci_low: .929 # reported sensitivity low point of 95% CI
+	  reported_sensitivity_95ci_high: 1 # reported sensitivity high point of 95% CI
+	  reported_specificity_point: 1 # reported specificity or negative percent agreement point estimate
+	  reported_specificity_95ci_low: .963 # reported specificity low point of 95% CI
+	  reported_specificity_95ci_high: 1 # reported specificity high point of 95% CI

individual_test_info/4/trial_data_4.yaml

@@ -1,32 +1,17 @@
-id: #ID number of the test
+id: 4 #ID number of the test
 trials: 
   -
-    type: # type of trial. e.g. "molecular" or "serology igm" or "serology igg"
-	  n_total: # total number of patients in clinical trial
-	  n_pos: # number of patients in clinical trial with sars-cov-2
-	  n_neg: # number of patients in clinical trial without sars-cov-2
-	  tp: # number of patients with sars-cov-2 that got a positive result
-	  fp: # number of patients without sars-cov-2 that got a positive result
-	  tn: # number of patiens without sars-cov-2 that got a negative result
-	  fn: # number of patiens with sars-cov-2 that got a positive result
-	  reported_sensitivity_point: # reported sensitivity or positive percent agreement point estimate
+    type: molecular # type of trial. e.g. "molecular" or "serology igm" or "serology igg"
+	  n_total: 120 # total number of patients in clinical trial
+	  n_pos: 60 # number of patients in clinical trial with sars-cov-2
+	  n_neg: 60 # number of patients in clinical trial without sars-cov-2
+	  tp: 60 # number of patients with sars-cov-2 that got a positive result
+	  fp: 0 # number of patients without sars-cov-2 that got a positive result
+	  tn: 60 # number of patiens without sars-cov-2 that got a negative result
+	  fn: 0 # number of patiens with sars-cov-2 that got a positive result
+	  reported_sensitivity_point: 1 # reported sensitivity or positive percent agreement point estimate
 	  reported_sensitivity_95ci_low: # reported sensitivity low point of 95% CI
 	  reported_sensitivity_95ci_high: # reported sensitivity high point of 95% CI
-	  reported_specificity_point: # reported specificity or negative percent agreement point estimate
+	  reported_specificity_point: 1 # reported specificity or negative percent agreement point estimate
 	  reported_specificity_95ci_low: # reported specificity low point of 95% CI
 	  reported_specificity_95ci_high: # reported specificity high point of 95% CI
-  -
-    type:
-	  n_total:
-	  n_pos:
-	  n_neg:
-	  tp:
-	  fp:
-	  tn:
-	  fn:
-	  reported_sensitivity_point:
-	  reported_sensitivity_95ci_low:
-	  reported_sensitivity_95ci_high:
-	  reported_specificity_point:
-	  reported_specificity_95ci_low:
-	  reported_specificity_95ci_high:

individual_test_info/5/trial_data_5.yaml

@@ -1,32 +1,34 @@
-id: #ID number of the test
+id: 5 #ID number of the test
 trials: 
   -
-    type: # type of trial. e.g. "molecular" or "serology igm" or "serology igg"
-	  n_total: # total number of patients in clinical trial
-	  n_pos: # number of patients in clinical trial with sars-cov-2
-	  n_neg: # number of patients in clinical trial without sars-cov-2
-	  tp: # number of patients with sars-cov-2 that got a positive result
-	  fp: # number of patients without sars-cov-2 that got a positive result
-	  tn: # number of patiens without sars-cov-2 that got a negative result
-	  fn: # number of patiens with sars-cov-2 that got a positive result
-	  reported_sensitivity_point: # reported sensitivity or positive percent agreement point estimate
-	  reported_sensitivity_95ci_low: # reported sensitivity low point of 95% CI
-	  reported_sensitivity_95ci_high: # reported sensitivity high point of 95% CI
-	  reported_specificity_point: # reported specificity or negative percent agreement point estimate
-	  reported_specificity_95ci_low: # reported specificity low point of 95% CI
-	  reported_specificity_95ci_high: # reported specificity high point of 95% CI
+    type: molecular # type of trial. e.g. "molecular" or "serology igm" or "serology igg"
+	  n_total: 178 # total number of patients in clinical trial
+	  n_pos: 69 # number of patients in clinical trial with sars-cov-2
+	  n_neg: 109 # number of patients in clinical trial without sars-cov-2
+	  tp: 69 # number of patients with sars-cov-2 that got a positive result
+	  fp: 0 # number of patients without sars-cov-2 that got a positive result
+	  tn: 109 # number of patiens without sars-cov-2 that got a negative result
+	  fn: 0 # number of patiens with sars-cov-2 that got a positive result
+	  reported_sensitivity_point: 1 # reported sensitivity or positive percent agreement point estimate
+	  reported_sensitivity_95ci_low: .947 # reported sensitivity low point of 95% CI
+	  reported_sensitivity_95ci_high: 1 # reported sensitivity high point of 95% CI
+	  reported_specificity_point: 1 # reported specificity or negative percent agreement point estimate
+	  reported_specificity_95ci_low: .966 # reported specificity low point of 95% CI
+	  reported_specificity_95ci_high: 1 # reported specificity high point of 95% CI
+	  notes: swab specimines
   -
-    type:
-	  n_total:
-	  n_pos:
-	  n_neg:
-	  tp:
-	  fp:
-	  tn:
-	  fn:
-	  reported_sensitivity_point:
-	  reported_sensitivity_95ci_low:
-	  reported_sensitivity_95ci_high:
-	  reported_specificity_point:
-	  reported_specificity_95ci_low:
-	  reported_specificity_95ci_high:
+    type: molecular
+	  n_total: 178
+	  n_pos: 70
+	  n_neg: 108
+	  tp: 70
+	  fp: 0
+	  tn: 108
+	  fn: 0
+	  reported_sensitivity_point: 1
+	  reported_sensitivity_95ci_low: .948
+	  reported_sensitivity_95ci_high: 1
+	  reported_specificity_point: 1
+	  reported_specificity_95ci_low: .966
+	  reported_specificity_95ci_high: 1
+	  notes: lower resperatory tract