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pip-compile(deps): bump snakemake from 7.20.0 to 7.25.2 #132

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@dependabot dependabot bot commented on behalf of github May 1, 2023

Bumps snakemake from 7.20.0 to 7.25.2.

Release notes

Sourced from snakemake's releases.

v7.25.2

7.25.2 (2023-04-28)

Bug Fixes

  • Fix inconsistencies between detailed summary and normal summary (#2218) (d903123)
  • Fix race condition when creating lock directory (#2225) (66ea4d1)
  • quote paths given to singularity in order to ensure that it does not fail when paths contain whitespace (#2190) (a572fb7)

Documentation

  • added changelog info for >v7.19.1 parsing error of "hh:mm:ss" time format in runtime resource (#2189) (2889f38)
  • update misc/vim/Readme with info for packer.nvim (#2095) (32166a7)
  • Update workflow syntax with priority directive (#2188) (af10db5)

v7.25.1

7.25.1 (2023-04-28)

Bug Fixes

  • allow log directive in default target rule (#2191) (86e9624)
  • only consider global wildcard_constraints from the same module (#2235) (c412b71)
  • Use job.rule.name attribute to fill rule field in summary (#2217) (837c3fd)

Documentation

v7.25.0

7.25.0 (2023-03-23)

Features

Bug Fixes

  • always make sure that the original path of source cached files is properly passed into metadata persistence records (#2179) (8bacbd0)
  • slurm batch job status queries (#2167) (0bb69e4)

Documentation

... (truncated)

Changelog

Sourced from snakemake's changelog.

7.25.2 (2023-04-28)

Bug Fixes

  • Fix inconsistencies between detailed summary and normal summary (#2218) (d903123)
  • Fix race condition when creating lock directory (#2225) (66ea4d1)
  • quote paths given to singularity in order to ensure that it does not fail when paths contain whitespace (#2190) (a572fb7)

Documentation

  • added changelog info for >v7.19.1 parsing error of "hh:mm:ss" time format in runtime resource (#2189) (2889f38)
  • update misc/vim/Readme with info for packer.nvim (#2095) (32166a7)
  • Update workflow syntax with priority directive (#2188) (af10db5)

7.25.1 (2023-04-28)

Bug Fixes

  • allow log directive in default target rule (#2191) (86e9624)
  • only consider global wildcard_constraints from the same module (#2235) (c412b71)
  • Use job.rule.name attribute to fill rule field in summary (#2217) (837c3fd)

Documentation

7.25.0 (2023-03-23)

Features

Bug Fixes

  • always make sure that the original path of source cached files is properly passed into metadata persistence records (#2179) (8bacbd0)
  • slurm batch job status queries (#2167) (0bb69e4)

Documentation

  • Change snakemake-tutorial download link to always be the latest (#2183) (ae8a8f4)
  • fix typos in --help (#2182) (09f0cbe)

... (truncated)

Commits
  • c7ae161 chore(main): release 7.25.2 (#2237)
  • 32166a7 docs: update misc/vim/Readme with info for packer.nvim (#2095)
  • af10db5 docs: Update workflow syntax with priority directive (#2188)
  • 2889f38 docs: added changelog info for >v7.19.1 parsing error of "hh:mm:ss" time form...
  • a572fb7 fix: quote paths given to singularity in order to ensure that it does not fai...
  • d903123 fix: Fix inconsistencies between detailed summary and normal summary (#2218)
  • 66ea4d1 fix: Fix race condition when creating lock directory (#2225)
  • da246d2 chore(main): release 7.25.1 (#2226)
  • 4ddc644 chore(deps): Bump marocchino/sticky-pull-request-comment from 2.5.0 to 2.6.2 ...
  • 837c3fd fix: Use job.rule.name attribute to fill rule field in summary (#2217)
  • Additional commits viewable in compare view

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Bumps [snakemake](https://github.com/snakemake/snakemake) from 7.20.0 to 7.25.2.
- [Release notes](https://github.com/snakemake/snakemake/releases)
- [Changelog](https://github.com/snakemake/snakemake/blob/main/CHANGELOG.md)
- [Commits](snakemake/snakemake@v7.20.0...v7.25.2)

---
updated-dependencies:
- dependency-name: snakemake
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot bot added the versioning A version needs to be bumped, etc. label May 1, 2023
@dependabot dependabot bot requested a review from G-kodes May 1, 2023 14:15
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dependabot bot commented on behalf of github May 4, 2023

Superseded by #133.

@dependabot dependabot bot closed this May 4, 2023
@dependabot dependabot bot deleted the dependabot/pip/snakemake-7.25.2 branch May 4, 2023 13:08
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