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An SWC + Volume/TIFF Stack Viewer in WebGL
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README.md

WebGL Neuron Viewer

A neuron visualization system in WebGL, try it out online! The volume data is rendered using my WebGL volume raycaster. Neuron traces can be uploaded in the SWC file format. It can also load single-channel 8 or 16bit unsigned int TIFF images, if you want to try it on your own data.

Uses webgl-util for some WebGL utilities, glMatrix for matrix/vector operations, and my fork of tiff.js to load TIFF images.

Images

Displaying the DIADEM NC Layer 1 Axons dataset and the provided reference traces, courtesy De Paola et al. 2006, from the DIADEM Challenge.

DIADEM NC Layer 1

The Marmoset neurons are the 16bit TIFF stack version of the dataset available on OpenScivisDatasets, courtesy of Fred Federer and Alessandra Angelucci.

Marmoset

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