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@UCSC-nanopore-cgl

UCSC Nanopore and CGL

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  1. MarginPolish MarginPolish Public

    Forked from benedictpaten/marginPhase

    MarginPolish: Graph based assembly polishing

    C 45 9

  2. margin margin Public

    C 27 5

  3. signalAlign signalAlign Public

    HMM-HDP models for MinION signal alignments

    C 6 5

  4. PyPore PyPore Public

    Forked from jmschrei/PyPore

    Tools used to analyze data from nanopore-based experiments.

    Python 1

  5. nanopore-RNN nanopore-RNN Public

    Collaboration repository with Nanopore Group

    Python 4

  6. marginAlign marginAlign Public

    Forked from benedictpaten/marginAlign

    UCSC Nanopore

    Python

Repositories

Showing 10 of 10 repositories
  • toil-marginPhase Public

    TOIL marginPhase pipeline

    UCSC-nanopore-cgl/toil-marginPhase’s past year of commit activity
    Python 0 MIT 1 0 1 Updated Nov 18, 2022
  • margin Public
    UCSC-nanopore-cgl/margin’s past year of commit activity
    C 27 MIT 5 6 0 Updated Nov 6, 2022
  • signalAlign Public

    HMM-HDP models for MinION signal alignments

    UCSC-nanopore-cgl/signalAlign’s past year of commit activity
    C 6 MIT 5 1 0 Updated Sep 9, 2022
  • MarginPolish Public Forked from benedictpaten/marginPhase

    MarginPolish: Graph based assembly polishing

    UCSC-nanopore-cgl/MarginPolish’s past year of commit activity
    C 45 MIT 16 2 0 Updated Nov 24, 2020
  • sonLib Public Forked from benedictpaten/sonLib

    Small general purpose library for C and Python with focus on bioinformatics.

    UCSC-nanopore-cgl/sonLib’s past year of commit activity
    C 0 MIT 25 0 0 Updated Oct 30, 2020
  • nanopore-toolkit Public

    Nanopore toolkit for basic processing of nanopore reads

    UCSC-nanopore-cgl/nanopore-toolkit’s past year of commit activity
    C++ 0 MIT 0 0 0 Updated Oct 29, 2019
  • NaRLE Public

    Nanopore Run Length Encoding: analysis pipeline

    UCSC-nanopore-cgl/NaRLE’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Aug 2, 2019
  • nanopore-RNN Public

    Collaboration repository with Nanopore Group

    UCSC-nanopore-cgl/nanopore-RNN’s past year of commit activity
    Python 0 MIT 4 0 0 Updated May 10, 2018
  • PyPore Public Forked from jmschrei/PyPore

    Tools used to analyze data from nanopore-based experiments.

    UCSC-nanopore-cgl/PyPore’s past year of commit activity
    Python 1 MIT 8 0 0 Updated Feb 10, 2018
  • marginAlign Public Forked from benedictpaten/marginAlign

    UCSC Nanopore

    UCSC-nanopore-cgl/marginAlign’s past year of commit activity
    Python 0 MIT 20 0 0 Updated Aug 7, 2017

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