Merge pull request #20 from jread-usgs/master

updated build
USGS-R · Sep 3, 2015 · ee8a249 · ee8a249
2 parents 0746e58 + 3593c66
commit ee8a249
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Showing 9 changed files with 58 additions and 7 deletions.
diff --git a/NAMESPACE b/NAMESPACE
@@ -1,4 +1,4 @@
-# Generated by roxygen2 (4.0.2): do not edit by hand
+# Generated by roxygen2 (4.1.1): do not edit by hand
 
 export(MAD)
 export(block_stats)

diff --git a/inst/extdata/pellerin_repeat.yml b/inst/extdata/pellerin_repeat.yml
@@ -0,0 +1,44 @@
+outlier_removal:
+    - expression:   x < 0.01
+      description:  obs below detection
+      type:         threshold
+
+    - expression:   x > 99
+      description:  obs above range
+      type:         threshold
+
+    - expression:   n > 10
+      description:  questionable persistent value  
+      type:         persistent
+
+    - expression:   x = 999999
+      description:  logger error code
+      type:         error_code
+
+    - expression:   missing(x)
+      description:  missing value
+      type:         error_code      
+
+    - expression:   x = -999
+      description:  logger missing value code
+      type:         error_code
+
+    - expression:   MAD(x) > 3
+      description:  median absolute deviation exceeded
+      type:         stat_window
+
+block_stats:
+    - expression:   MAD(CV) > 3
+      description:  median absolute deviation of the windowed CVs exceeded
+      type:         threshold
+
+    - expression:   flags > 30%
+      description:  total number of values within block too low
+      type:         threshold
+
+data_source:
+    - file_name:    test_data_repeat.txt
+      folder_name:  ./
+      format:       wide_burst
+      window:       auto
+      date_type:    mm/dd/YYYY HH:MM
diff --git a/inst/extdata/test_data_repeat.txt b/inst/extdata/test_data_repeat.txt
diff --git a/man/MAD.Rd b/man/MAD.Rd
@@ -1,4 +1,5 @@
-% Generated by roxygen2 (4.0.2): do not edit by hand
+% Generated by roxygen2 (4.1.1): do not edit by hand
+% Please edit documentation in R/flag_functions.R
 \name{MAD}
 \alias{MAD}
 \title{median absolute deviation outlier test}

diff --git a/man/build_flags.Rd b/man/build_flags.Rd
@@ -1,4 +1,5 @@
-% Generated by roxygen2 (4.0.2): do not edit by hand
+% Generated by roxygen2 (4.1.1): do not edit by hand
+% Please edit documentation in R/build_flags.R
 \name{build_flags}
 \alias{build_flags}
 \title{Creates flag vector based on input data}

diff --git a/man/clean_data.Rd b/man/clean_data.Rd
@@ -1,4 +1,5 @@
-% Generated by roxygen2 (4.0.2): do not edit by hand
+% Generated by roxygen2 (4.1.1): do not edit by hand
+% Please edit documentation in R/clean_data.R
 \name{clean_data}
 \alias{clean_data}
 \title{cleans sensor data with user-specified routines}

diff --git a/man/load_sensor.Rd b/man/load_sensor.Rd
@@ -1,4 +1,5 @@
-% Generated by roxygen2 (4.0.2): do not edit by hand
+% Generated by roxygen2 (4.1.1): do not edit by hand
+% Please edit documentation in R/load_sensor.R
 \name{load_sensor}
 \alias{load_sensor}
 \title{Loads sensor data into data.frame}

diff --git a/man/load_sqc.Rd b/man/load_sqc.Rd
@@ -1,4 +1,5 @@
-% Generated by roxygen2 (4.0.2): do not edit by hand
+% Generated by roxygen2 (4.1.1): do not edit by hand
+% Please edit documentation in R/load_sqc.R
 \name{load_sqc}
 \alias{load_sqc}
 \title{load in configuration file for sensorQC}

diff --git a/man/window_data.Rd b/man/window_data.Rd
@@ -1,4 +1,5 @@
-% Generated by roxygen2 (4.0.2): do not edit by hand
+% Generated by roxygen2 (4.1.1): do not edit by hand
+% Please edit documentation in R/window_data.R
 \name{window_data}
 \alias{window_data}
 \title{window sensorQC data}