GeoDeepDive Global Geologic Units Application

A test application built by Daven Quinn and others to subset data about the spatiotemporal extent of geologic units from information contained in the GeoDeepDive database.

Installation

You need a recent Python 3 installation and PostgreSQL to run this model locally.

Create a PostgreSQL database to hold the model input and output data. A typical database creation command would be psql -c "CREATE DATABASE global_geology_test"

Copy credentials.yml.template to credentials.yml and change values to match your local PostgreSQL configuration.

Test data subset from the GeoDeepDive corpus should be downloaded from the GeoDeepDive server and extracted into the input directory of this repository. Then run bin/run-model load-test-data to load this data into the database.

Executables

All of the functionality of the model can be accessed from a single bash executable.

• bin/run-model setup installs required Python packages and PostGIS extensions (note: the database must be created separately).
• bin/run-model load-test-data provisions test data in the ignimbrites_sentences_nlp352 table (optionally specifying a filename)
• bin/run-model --all runs the model and dumps generated tables (excluding the main sentences table) to the output directory.

All of the steps of the model can be run independently, check out bin/run-model --help for details.

Check out the wiki for more information on getting started.

License

CC-BY 4.0 International for application exceuction on GDD infrastructure applied to open access documents

CC-BY-NC 4.0 International for application exceuction on GDD infrastructure applied to select non-open access documents