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BUG: Fix access_urls for some services #152

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merged 3 commits into from Sep 11, 2017
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2 changes: 1 addition & 1 deletion .appveyor.yml
Expand Up @@ -16,7 +16,7 @@ install:
# Use the pre-installed Miniconda for the desired arch
- ps: if($env:PYTHON_VERSION -eq '3.6')
{ $env:CONDA_PATH="$($env:CONDA_PATH)36" }
- ps: if($env:TARGET_ARCH -eq 'x64')
- ps: if($env:PLATFORM -eq 'x64')
{ $env:CONDA_PATH="$($env:CONDA_PATH)-x64" }
- ps: $env:path="$($env:CONDA_PATH);$($env:CONDA_PATH)\Scripts;$($env:CONDA_PATH)\Library\bin;C:\cygwin\bin;$($env:PATH)"
- cmd: conda config --set always_yes yes --set changeps1 no
Expand Down
2 changes: 1 addition & 1 deletion .coveragerc
@@ -1,2 +1,2 @@
[run]
omit = siphon/_version.py,siphon/cdmr/*_pb2.py,*/tests/*
omit = siphon/_version.py,siphon/cdmr/*_pb2.py
15 changes: 9 additions & 6 deletions siphon/catalog.py
Expand Up @@ -410,15 +410,18 @@ def make_access_urls(self, catalog_url, all_services, metadata=None):
The top level server url
all_services : List[SimpleService]
list of :class:`SimpleService` objects associated with the dataset
metadata : TDSCatalogMetadata
metadata : dict
Metadata from the :class:`TDSCatalog`

"""
all_service_dict = {service.name: service for service in all_services}
service_name = None
if metadata:
if 'serviceName' in metadata:
service_name = metadata['serviceName']
all_service_dict = {}
for service in all_services:
all_service_dict[service.name] = service
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Should this be in an else? (i.e. should the compound service be in the dictionary or just it's sub services?)

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You want both. I initially had it as an else, and it (rightly) failed tests.

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👍

if isinstance(service, CompoundService):
for subservice in service.services:
all_service_dict[subservice.name] = subservice

service_name = metadata.get('serviceName', None)

access_urls = {}
server_url = _find_base_tds_url(catalog_url)
Expand Down
99 changes: 99 additions & 0 deletions siphon/tests/fixtures/cat_only_http
@@ -0,0 +1,99 @@
interactions:
- request:
body: null
headers:
Accept: ['*/*']
Accept-Encoding: ['gzip, deflate']
Connection: [keep-alive]
User-Agent: [Siphon (0.5.0+13.g0e639e9.dirty)]
method: GET
uri: http://thredds-test.unidata.ucar.edu/thredds/catalog/noaaport/text/tropical/atlantic/hdob/catalog.xml
response:
body: {string: "<?xml version=\"1.0\" encoding=\"UTF-8\"?>\r\n<catalog xmlns=\"http://www.unidata.ucar.edu/namespaces/thredds/InvCatalog/v1.0\"
xmlns:xlink=\"http://www.w3.org/1999/xlink\" version=\"1.2\">\r\n <service
name=\"latest\" serviceType=\"Resolver\" base=\"\" />\r\n <service name=\"fullServices\"
serviceType=\"Compound\" base=\"\">\r\n <service name=\"ncdods\" serviceType=\"OPENDAP\"
base=\"/thredds/dodsC/\" />\r\n <service name=\"HTTPServer\" serviceType=\"HTTPServer\"
base=\"/thredds/fileServer/\" />\r\n <service name=\"wcs\" serviceType=\"WCS\"
base=\"/thredds/wcs/\" />\r\n <service name=\"wms\" serviceType=\"WMS\"
base=\"/thredds/wms/\" />\r\n <service name=\"ncss\" serviceType=\"NetcdfSubset\"
base=\"/thredds/ncss/\" />\r\n <service name=\"cdmremote\" serviceType=\"CdmRemote\"
base=\"/thredds/cdmremote/\" />\r\n <service name=\"gridcoverage\" serviceType=\"CdmrFeature\"
base=\"/thredds/cdmrfeature/grid/\" />\r\n <service name=\"ncml\" serviceType=\"NCML\"
base=\"/thredds/ncml/\" />\r\n <service name=\"uddc\" serviceType=\"UDDC\"
base=\"/thredds/uddc/\" />\r\n <service name=\"iso\" serviceType=\"ISO\"
base=\"/thredds/iso/\" />\r\n </service>\r\n <dataset name=\"tropical/atlantic/hdob/\">\r\n
\ <serviceName>HTTPServer</serviceName>\r\n <property name=\"DatasetScan\"
value=\"true\" />\r\n <metadata inherited=\"true\">\r\n <serviceName>HTTPServer</serviceName>\r\n
\ </metadata>\r\n <dataset name=\"High_density_obs_20170824.txt\" ID=\"noaaport-text/tropical/atlantic/hdob/High_density_obs_20170824.txt\"
urlPath=\"noaaport/text/tropical/atlantic/hdob/High_density_obs_20170824.txt\">\r\n
\ <dataSize units=\"Kbytes\">11.75</dataSize>\r\n <property name=\"NotAThreddsDataset\"
value=\"true\" />\r\n <date type=\"modified\">2017-08-25T00:00:27Z</date>\r\n
\ </dataset>\r\n <dataset name=\"High_density_obs_20170825.txt\" ID=\"noaaport-text/tropical/atlantic/hdob/High_density_obs_20170825.txt\"
urlPath=\"noaaport/text/tropical/atlantic/hdob/High_density_obs_20170825.txt\">\r\n
\ <dataSize units=\"Kbytes\">357.0</dataSize>\r\n <property name=\"NotAThreddsDataset\"
value=\"true\" />\r\n <date type=\"modified\">2017-08-25T23:54:05Z</date>\r\n
\ </dataset>\r\n <dataset name=\"High_density_obs_20170826.txt\" ID=\"noaaport-text/tropical/atlantic/hdob/High_density_obs_20170826.txt\"
urlPath=\"noaaport/text/tropical/atlantic/hdob/High_density_obs_20170826.txt\">\r\n
\ <dataSize units=\"Kbytes\">63.33</dataSize>\r\n <property name=\"NotAThreddsDataset\"
value=\"true\" />\r\n <date type=\"modified\">2017-08-26T05:46:05Z</date>\r\n
\ </dataset>\r\n <dataset name=\"High_density_obs_20170828.txt\" ID=\"noaaport-text/tropical/atlantic/hdob/High_density_obs_20170828.txt\"
urlPath=\"noaaport/text/tropical/atlantic/hdob/High_density_obs_20170828.txt\">\r\n
\ <dataSize units=\"Kbytes\">51.55</dataSize>\r\n <property name=\"NotAThreddsDataset\"
value=\"true\" />\r\n <date type=\"modified\">2017-08-28T21:00:06Z</date>\r\n
\ </dataset>\r\n <dataset name=\"High_density_obs_20170829.txt\" ID=\"noaaport-text/tropical/atlantic/hdob/High_density_obs_20170829.txt\"
urlPath=\"noaaport/text/tropical/atlantic/hdob/High_density_obs_20170829.txt\">\r\n
\ <dataSize units=\"Kbytes\">32.40</dataSize>\r\n <property name=\"NotAThreddsDataset\"
value=\"true\" />\r\n <date type=\"modified\">2017-08-29T19:46:07Z</date>\r\n
\ </dataset>\r\n <dataset name=\"High_density_obs_20170831.txt\" ID=\"noaaport-text/tropical/atlantic/hdob/High_density_obs_20170831.txt\"
urlPath=\"noaaport/text/tropical/atlantic/hdob/High_density_obs_20170831.txt\">\r\n
\ <dataSize units=\"Kbytes\">10.31</dataSize>\r\n <property name=\"NotAThreddsDataset\"
value=\"true\" />\r\n <date type=\"modified\">2017-08-31T23:42:07Z</date>\r\n
\ </dataset>\r\n <dataset name=\"High_density_obs_20170902.txt\" ID=\"noaaport-text/tropical/atlantic/hdob/High_density_obs_20170902.txt\"
urlPath=\"noaaport/text/tropical/atlantic/hdob/High_density_obs_20170902.txt\">\r\n
\ <dataSize units=\"Kbytes\">55.67</dataSize>\r\n <property name=\"NotAThreddsDataset\"
value=\"true\" />\r\n <date type=\"modified\">2017-09-02T22:48:00Z</date>\r\n
\ </dataset>\r\n <dataset name=\"High_density_obs_20170903.txt\" ID=\"noaaport-text/tropical/atlantic/hdob/High_density_obs_20170903.txt\"
urlPath=\"noaaport/text/tropical/atlantic/hdob/High_density_obs_20170903.txt\">\r\n
\ <dataSize units=\"Kbytes\">73.25</dataSize>\r\n <property name=\"NotAThreddsDataset\"
value=\"true\" />\r\n <date type=\"modified\">2017-09-03T23:53:07Z</date>\r\n
\ </dataset>\r\n <dataset name=\"High_density_obs_20170904.txt\" ID=\"noaaport-text/tropical/atlantic/hdob/High_density_obs_20170904.txt\"
urlPath=\"noaaport/text/tropical/atlantic/hdob/High_density_obs_20170904.txt\">\r\n
\ <dataSize units=\"Kbytes\">268.5</dataSize>\r\n <property name=\"NotAThreddsDataset\"
value=\"true\" />\r\n <date type=\"modified\">2017-09-05T00:05:12Z</date>\r\n
\ </dataset>\r\n <dataset name=\"High_density_obs_20170905.txt\" ID=\"noaaport-text/tropical/atlantic/hdob/High_density_obs_20170905.txt\"
urlPath=\"noaaport/text/tropical/atlantic/hdob/High_density_obs_20170905.txt\">\r\n
\ <dataSize units=\"Kbytes\">320.1</dataSize>\r\n <property name=\"NotAThreddsDataset\"
value=\"true\" />\r\n <date type=\"modified\">2017-09-05T23:36:21Z</date>\r\n
\ </dataset>\r\n </dataset>\r\n</catalog>\r\n"}
headers:
Access-Control-Allow-Origin: ['*']
Connection: [Keep-Alive]
Content-Language: [en-US]
Content-Type: [application/xml;charset=UTF-8]
Date: ['Tue, 05 Sep 2017 23:38:46 GMT']
Keep-Alive: ['timeout=5, max=100']
Server: [Apache/2.4.27 (Unix) OpenSSL/1.0.1e-fips mod_jk/1.2.42]
X-Frame-Options: [SAMEORIGIN]
status: {code: 200, message: '200'}
- request:
body: null
headers:
Accept: ['*/*']
Accept-Encoding: ['gzip, deflate']
Connection: [keep-alive]
User-Agent: [Siphon (0.5.0+13.g0e639e9.dirty)]
method: GET
uri: http://thredds-test.unidata.ucar.edu/thredds/catalog/noaaport/text/tropical/atlantic/hdob/latest.xml
response:
body: {string: 'Throwable exception handled : null'}
headers:
Access-Control-Allow-Origin: ['*']
Connection: [close]
Content-Length: ['34']
Content-Type: [text/plain]
Date: ['Tue, 05 Sep 2017 23:38:48 GMT']
Server: [Apache/2.4.27 (Unix) OpenSSL/1.0.1e-fips mod_jk/1.2.42]
X-Frame-Options: [SAMEORIGIN]
status: {code: 500, message: '500'}
version: 1
11 changes: 11 additions & 0 deletions siphon/tests/test_catalog.py
Expand Up @@ -216,3 +216,14 @@ def test_access_elements():
url = 'http://oceandata.sci.gsfc.nasa.gov/opendap/SeaWiFS/L3SMI/2001/001/catalog.xml'
cat = TDSCatalog(url)
assert len(list(cat.datasets)) != 0


@recorder.use_cassette('cat_only_http')
def test_simple_service_within_compound():
"""Test parsing of a catalog that asks for a single service within a compound one."""
url = ('http://thredds-test.unidata.ucar.edu/thredds/catalog/noaaport/text/'
'tropical/atlantic/hdob/catalog.xml')
cat = TDSCatalog(url)
assert (cat.datasets[0].access_urls ==
{'HTTPServer': 'http://thredds-test.unidata.ucar.edu/thredds/fileServer/noaaport/'
'text/tropical/atlantic/hdob/High_density_obs_20170824.txt'})