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1.3.0-alpha #90

Merged
merged 27 commits into from
Dec 19, 2018
Merged

1.3.0-alpha #90

merged 27 commits into from
Dec 19, 2018

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daniaki
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@daniaki daniaki commented Dec 19, 2018 •
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Major

  • ScoreSet licence can be changed post publish.
  • Licence and download time metadata added to CSV files.
  • Amino acids Xaa, ??? and ? are converted to X for compliance with mutalyzer/biocommons hgvs.
  • Nucleotides X/x converted to N/n for compliance with mutalyzer/biocommons hgvs.
  • URN column added to CSV files.

Minor

  • CSV variants sorted by URN.
  • Downloads are no longer cached since the licence can be changed.
  • Licence field on ScoreSets are version controlled.

daniel added 27 commits December 4, 2018 13:51
Added utilities for formatting variants (mavedb-convert concordant)…
07c51b6 
… and splitting multi variants
Test updates
10a6899
Added df.apply format_variants
8f40ab5
format_variant handles multi-variants
a7540e4
Test updates
ad1dda0
Refactored scores/counts views to reduce code duplication; added comm…
10f172c 
…ents to files
Added support for licence field version control
b91c5b3
Licence is editable after publication
e51352c
Added licence to tracked fields
108d9f6
ScoreSetFactory adds licence
f13150f
Catch error using cls.DoesNotExist
359a72d
Added trailing newline
a65e5b7
Pulled files from previous commit coming up as modified so I have to …
aa34dc7 
…push them again.
Using regex in format_variant to make it faster
50143b0
Test updates
f99165a
Test updates
d9aa8c4
Convert Xaa to X
4cae554
Sort by variants by urn before output into CSV
ee87474
Added variants before publish so variants get a public URN
3d156db
Updated hgvsp requirement URL
4afe9a1
Additional testing
251ff23
Removed check for private scoreset when sorting
4e03caf
Removed file cache
b61d91c
Removed check for existing variants in delete_variants
ce2fda2
Updated version to 1.3.0-alpha
32623e5
Fixed tests
db645f9
Added urn sorter by index
d534ae5
@daniaki daniaki changed the title Develop 1.3.0-alpha Dec 19, 2018
@afrubin afrubin merged commit 81612df into master Dec 19, 2018
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@daniaki @afrubin