2.2.2

• Fixes a bug in the upload API where optional metadata was required
• Fixes a bug where it was not possible to reach hosted documentation
• Updates mavehgvs to v0.5.0, adding support for frame shift protein variants

2.2.1

Fixes an error when creating a meta-analysis score set with too many children.

2.2.0

This version includes several minor updates:

• Uploading datasets now returns an 201 status code with the urn of the new record. Support for this has been added to MaveTools v0.2.0
• Updated the documentation pages and created a new landing page at https://www.mavedb.org/docs
• Updated dependencies in response to reported vulnerabilities

2.1.0

This version includes two new API endpoints and substantial improvements to the documentation.

• Added dataset upload API.
• Added API endpoint for downloading individual variant data.
• Added a CORS header allowing browser-based clients to consume the API.
• New documentation site and updates.
• MaveTools and mavehgvs documentation now available on the website.

2.0.3

This version includes several minor bugfixes and cosmetic changes.

• Updated SRA identifier, DOI, and PubMed field names.
• Fixed a bug that allowed ArrayExpress array identifiers as raw read data accessions.
• Fixed a bug with publishing datasets due to count or score column ordering.
• Fixed a bug that was causing target sequence related accession numbers (e.g. UniProt ID) to not auto-fill.
• Fixed a bug that prevented editing score set metadata after making records public.
• Tag the correct version of postgres in the Docker files.

2.0.2

Fixed a bug that prevented datasets with an amino acid target sequence from validating unless both counts and scores files were uploaded.

2.0.1

Updated dependencies to fix validation errors and support variants that are target-identical at a specific position (such as in MITE-seq data).

2.0.0

This is a major update that includes numerous improvements, particularly in variant formatting and dataset validation.

Major

• Saturation genome editing data is now supported, with a new hgvs_tx column that can describe splice variants.
• The dataset search page has been rewritten to be more usable and more performant.
• Variants are now represented using the format defined by MAVE-HGVS. This is very similar to the previous Enrich2-like format, but please consult the documentation for key differences.
• Variants are now validated against the target sequence on upload.

Minor

• Additional raw data accessions (GEO, ArrayExpress) are now supported.
• A new admin page has been added to simplify database administration for staff.
• MaveDB can now be deployed using Docker Compose. Developers should consult the new developer documentation for instructions on how to get a local instance up and running.

1.7.1

Added new manage.py commands:

• python manage.py adduser --user ORCID --urn URN --role (administrator|editor|viewer)
• python manage.py addpmid --urn URN --pmid PMID

Each modifies a single entry, but can be used in a shell script to batch-update multiple records.

1.7.0

First full release version.