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Hello ,
I am trying to run structural variants annotations using annovar. Do annovar support it? If so can u help me with how to toggle structural variants input so the algorithm can get that?
Regards
Akhil
The text was updated successfully, but these errors were encountered:
You can do region-based annotation on structural variants. The input file
can be in generic format, chr, start, end, ref, alt are the columns. The
ref and alt can be "0" indicating unknown.
For translocations, if you have single-base resolution breakpoints, you can
treat it as two separate indels to see where the breakpoints are located in
annovar.
On Fri, Jul 1, 2022 at 1:08 PM akhilpampana ***@***.***> wrote:
Hello ,
I am trying to run structural variants annotations using annovar. Do
annovar support it? If so can u help me with how to toggle structural
variants input so the algorithm can get that?
Regards
Akhil
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Hello ,
I am trying to run structural variants annotations using annovar. Do annovar support it? If so can u help me with how to toggle structural variants input so the algorithm can get that?
Regards
Akhil
The text was updated successfully, but these errors were encountered: