Sync with Min github

.gitignore

@@ -2,4 +2,6 @@ doc/*.zip
 doc/*.tgz
 lib/cgiLog.txt
 *~
-thang/*
+thang/*
+tmp/*
+archive/*

CHANGELOG.txt

@@ -1,3 +1,7 @@
+100401e (done by Min on 100725)
+- Minor changes to paths and to make it work again from wing.nus directory
+  (moved from forecite, due to restructuring of WING server)
+
 100401d
 - Minor changes to documentation and ParsHed library updating.
 

bin/ParsCitClientWSDL.rb

@@ -1,10 +1,10 @@
 #!/usr/bin/env ruby
 require "soap/wsdlDriver"
 
-wsdl = "http://wing.comp.nus.edu.sg/~forecite/forecite.wsdl"
+sdl = "http://wing.comp.nus.edu.sg/~wing.nus/wing.nus.wsdl"
 driver = SOAP::WSDLDriverFactory.new(wsdl).create_rpc_driver
 
-output = driver.extract_citations("http://wing.comp.nus.edu.sg/~forecite/samples/W06-0102.txt")
-# output = driver.extract_header("/home/forecite/public_html/samples/W06-0102.txt")
-# output = driver.extract_meta("/home/forecite/public_html/samples/W06-0102.txt")
+output = driver.extract_citations("http://wing.comp.nus.edu.sg/~wing.nus/samples/W06-0102.txt")
+# output = driver.extract_header("/home/wing.nus/public_html/samples/W06-0102.txt")
+# output = driver.extract_meta("/home/wing.nus/public_html/samples/W06-0102.txt")
 puts output

bin/redo.parsCit.pl

@@ -8,7 +8,7 @@
 $tmpfile = "/tmp/" . $tmpfile;
 $0 =~ /([^\/]+)$/; my $progname = $1;
 my $outputVersion = "1.0";
-my $parscitHome = "/home/forecite/services/parscit/";
+my $parscitHome = "/home/wing.nus/services/parscit/tools/";
 my $tr2crfppLoc = "$parscitHome/bin/tr2crfpp.pl";
 my $crf_learnLoc = "$parscitHome/crfpp/crf_learn";
 my $crf_testLoc = "$parscitHome/crfpp/crf_test";

crfpp/CRF++-0.51/.libs/libcrfpp.la

@@ -0,0 +1,35 @@
+# libcrfpp.la - a libtool library file
+# Generated by ltmain.sh - GNU libtool 1.5.6 (1.1220.2.95 2004/04/11 05:50:42)
+#
+# Please DO NOT delete this file!
+# It is necessary for linking the library.
+
+# The name that we can dlopen(3).
+dlname='libcrfpp.so.0'
+
+# Names of this library.
+library_names='libcrfpp.so.0.0.0 libcrfpp.so.0 libcrfpp.so'
+
+# The name of the static archive.
+old_library='libcrfpp.a'
+
+# Libraries that this one depends upon.
+dependency_libs=' -lpthread'
+
+# Version information for libcrfpp.
+current=0
+age=0
+revision=0
+
+# Is this an already installed library?
+installed=no
+
+# Should we warn about portability when linking against -modules?
+shouldnotlink=no
+
+# Files to dlopen/dlpreopen
+dlopen=''
+dlpreopen=''
+
+# Directory that this library needs to be installed in:
+libdir='/usr/local/lib'

crfpp/crf_learn

@@ -0,0 +1,117 @@
+#! /bin/sh
+
+# crf_learn - temporary wrapper script for .libs/crf_learn
+# Generated by ltmain.sh - GNU libtool 1.5.6 (1.1220.2.95 2004/04/11 05:50:42)
+#
+# The crf_learn program cannot be directly executed until all the libtool
+# libraries that it depends on are installed.
+#
+# This wrapper script should never be moved out of the build directory.
+# If it is, it will not operate correctly.
+
+# Sed substitution that helps us do robust quoting.  It backslashifies
+# metacharacters that are still active within double-quoted strings.
+Xsed='/bin/sed -e 1s/^X//'
+sed_quote_subst='s/\([\\`\\"$\\\\]\)/\\\1/g'
+
+# The HP-UX ksh and POSIX shell print the target directory to stdout
+# if CDPATH is set.
+if test "${CDPATH+set}" = set; then CDPATH=:; export CDPATH; fi
+
+relink_command="(cd /home/forecite/services/parscit/crfpp/CRF++-0.51; { test -z \"\${LIBRARY_PATH+set}\" || unset LIBRARY_PATH || { LIBRARY_PATH=; export LIBRARY_PATH; }; }; { test -z \"\${COMPILER_PATH+set}\" || unset COMPILER_PATH || { COMPILER_PATH=; export COMPILER_PATH; }; }; { test -z \"\${GCC_EXEC_PREFIX+set}\" || unset GCC_EXEC_PREFIX || { GCC_EXEC_PREFIX=; export GCC_EXEC_PREFIX; }; }; { test -z \"\${LD_RUN_PATH+set}\" || unset LD_RUN_PATH || { LD_RUN_PATH=; export LD_RUN_PATH; }; }; { test -z \"\${LD_LIBRARY_PATH+set}\" || unset LD_LIBRARY_PATH || { LD_LIBRARY_PATH=; export LD_LIBRARY_PATH; }; }; PATH=\"/opt/hadoop_install/hadoop/bin:/sbin:/usr/sbin:/bin:/usr/bin:/usr/kerberos/bin:/usr/local/bin:/bin:/usr/bin:/home/forecite/services/emmaKeyphrase/posTag/mxpost:/home/forecite/bin\"; export PATH; g++ -O3 -Wall -Wno-deprecated -mieee-fp -o \$progdir/\$file crf_learn.o  ./.libs/libcrfpp.so -lm -lpthread -Wl,--rpath -Wl,/home/forecite/services/parscit/crfpp/CRF++-0.51/.libs -Wl,--rpath -Wl,/usr/local/lib)"
+
+# This environment variable determines our operation mode.
+if test "$libtool_install_magic" = "%%%MAGIC variable%%%"; then
+  # install mode needs the following variable:
+  notinst_deplibs=' libcrfpp.la'
+else
+  # When we are sourced in execute mode, $file and $echo are already set.
+  if test "$libtool_execute_magic" != "%%%MAGIC variable%%%"; then
+    echo="echo"
+    file="$0"
+    # Make sure echo works.
+    if test "X$1" = X--no-reexec; then
+      # Discard the --no-reexec flag, and continue.
+      shift
+    elif test "X`($echo '\t') 2>/dev/null`" = 'X\t'; then
+      # Yippee, $echo works!
+      :
+    else
+      # Restart under the correct shell, and then maybe $echo will work.
+      exec /bin/sh "$0" --no-reexec ${1+"$@"}
+    fi
+  fi
+
+  # Find the directory that this script lives in.
+  thisdir=`$echo "X$file" | $Xsed -e 's%/[^/]*$%%'`
+  test "x$thisdir" = "x$file" && thisdir=.
+
+  # Follow symbolic links until we get to the real thisdir.
+  file=`ls -ld "$file" | /bin/sed -n 's/.*-> //p'`
+  while test -n "$file"; do
+    destdir=`$echo "X$file" | $Xsed -e 's%/[^/]*$%%'`
+
+    # If there was a directory component, then change thisdir.
+    if test "x$destdir" != "x$file"; then
+      case "$destdir" in
+      [\\/]* | [A-Za-z]:[\\/]*) thisdir="$destdir" ;;
+      *) thisdir="$thisdir/$destdir" ;;
+      esac
+    fi
+
+    file=`$echo "X$file" | $Xsed -e 's%^.*/%%'`
+    file=`ls -ld "$thisdir/$file" | /bin/sed -n 's/.*-> //p'`
+  done
+
+  # Try to get the absolute directory name.
+  absdir=`cd "$thisdir" && pwd`
+  test -n "$absdir" && thisdir="$absdir"
+
+  program=lt-'crf_learn'
+  progdir="$thisdir/.libs"
+
+  if test ! -f "$progdir/$program" || \
+     { file=`ls -1dt "$progdir/$program" "$progdir/../$program" 2>/dev/null | /bin/sed 1q`; \
+       test "X$file" != "X$progdir/$program"; }; then
+
+    file="$$-$program"
+
+    if test ! -d "$progdir"; then
+      mkdir "$progdir"
+    else
+      rm -f "$progdir/$file"
+    fi
+
+    # relink executable if necessary
+    if test -n "$relink_command"; then
+      if relink_command_output=`eval $relink_command 2>&1`; then :
+      else
+	echo "$relink_command_output" >&2
+	rm -f "$progdir/$file"
+	exit 1
+      fi
+    fi
+
+    mv -f "$progdir/$file" "$progdir/$program" 2>/dev/null ||
+    { rm -f "$progdir/$program";
+      mv -f "$progdir/$file" "$progdir/$program"; }
+    rm -f "$progdir/$file"
+  fi
+
+  if test -f "$progdir/$program"; then
+    if test "$libtool_execute_magic" != "%%%MAGIC variable%%%"; then
+      # Run the actual program with our arguments.
+
+      exec $progdir/$program ${1+"$@"}
+
+      $echo "$0: cannot exec $program ${1+"$@"}"
+      exit 1
+    fi
+  else
+    # The program doesn't exist.
+    $echo "$0: error: $progdir/$program does not exist" 1>&2
+    $echo "This script is just a wrapper for $program." 1>&2
+    echo "See the libtool documentation for more information." 1>&2
+    exit 1
+  fi
+fi

crfpp/crf_test

@@ -0,0 +1,117 @@
+#! /bin/sh
+
+# crf_test - temporary wrapper script for .libs/crf_test
+# Generated by ltmain.sh - GNU libtool 1.5.6 (1.1220.2.95 2004/04/11 05:50:42)
+#
+# The crf_test program cannot be directly executed until all the libtool
+# libraries that it depends on are installed.
+#
+# This wrapper script should never be moved out of the build directory.
+# If it is, it will not operate correctly.
+
+# Sed substitution that helps us do robust quoting.  It backslashifies
+# metacharacters that are still active within double-quoted strings.
+Xsed='/bin/sed -e 1s/^X//'
+sed_quote_subst='s/\([\\`\\"$\\\\]\)/\\\1/g'
+
+# The HP-UX ksh and POSIX shell print the target directory to stdout
+# if CDPATH is set.
+if test "${CDPATH+set}" = set; then CDPATH=:; export CDPATH; fi
+
+relink_command="(cd /home/forecite/services/parscit/crfpp/CRF++-0.51; { test -z \"\${LIBRARY_PATH+set}\" || unset LIBRARY_PATH || { LIBRARY_PATH=; export LIBRARY_PATH; }; }; { test -z \"\${COMPILER_PATH+set}\" || unset COMPILER_PATH || { COMPILER_PATH=; export COMPILER_PATH; }; }; { test -z \"\${GCC_EXEC_PREFIX+set}\" || unset GCC_EXEC_PREFIX || { GCC_EXEC_PREFIX=; export GCC_EXEC_PREFIX; }; }; { test -z \"\${LD_RUN_PATH+set}\" || unset LD_RUN_PATH || { LD_RUN_PATH=; export LD_RUN_PATH; }; }; { test -z \"\${LD_LIBRARY_PATH+set}\" || unset LD_LIBRARY_PATH || { LD_LIBRARY_PATH=; export LD_LIBRARY_PATH; }; }; PATH=\"/opt/hadoop_install/hadoop/bin:/sbin:/usr/sbin:/bin:/usr/bin:/usr/kerberos/bin:/usr/local/bin:/bin:/usr/bin:/home/forecite/services/emmaKeyphrase/posTag/mxpost:/home/forecite/bin\"; export PATH; g++ -O3 -Wall -Wno-deprecated -mieee-fp -o \$progdir/\$file crf_test.o  ./.libs/libcrfpp.so -lm -lpthread -Wl,--rpath -Wl,/home/forecite/services/parscit/crfpp/CRF++-0.51/.libs -Wl,--rpath -Wl,/usr/local/lib)"
+
+# This environment variable determines our operation mode.
+if test "$libtool_install_magic" = "%%%MAGIC variable%%%"; then
+  # install mode needs the following variable:
+  notinst_deplibs=' libcrfpp.la'
+else
+  # When we are sourced in execute mode, $file and $echo are already set.
+  if test "$libtool_execute_magic" != "%%%MAGIC variable%%%"; then
+    echo="echo"
+    file="$0"
+    # Make sure echo works.
+    if test "X$1" = X--no-reexec; then
+      # Discard the --no-reexec flag, and continue.
+      shift
+    elif test "X`($echo '\t') 2>/dev/null`" = 'X\t'; then
+      # Yippee, $echo works!
+      :
+    else
+      # Restart under the correct shell, and then maybe $echo will work.
+      exec /bin/sh "$0" --no-reexec ${1+"$@"}
+    fi
+  fi
+
+  # Find the directory that this script lives in.
+  thisdir=`$echo "X$file" | $Xsed -e 's%/[^/]*$%%'`
+  test "x$thisdir" = "x$file" && thisdir=.
+
+  # Follow symbolic links until we get to the real thisdir.
+  file=`ls -ld "$file" | /bin/sed -n 's/.*-> //p'`
+  while test -n "$file"; do
+    destdir=`$echo "X$file" | $Xsed -e 's%/[^/]*$%%'`
+
+    # If there was a directory component, then change thisdir.
+    if test "x$destdir" != "x$file"; then
+      case "$destdir" in
+      [\\/]* | [A-Za-z]:[\\/]*) thisdir="$destdir" ;;
+      *) thisdir="$thisdir/$destdir" ;;
+      esac
+    fi
+
+    file=`$echo "X$file" | $Xsed -e 's%^.*/%%'`
+    file=`ls -ld "$thisdir/$file" | /bin/sed -n 's/.*-> //p'`
+  done
+
+  # Try to get the absolute directory name.
+  absdir=`cd "$thisdir" && pwd`
+  test -n "$absdir" && thisdir="$absdir"
+
+  program=lt-'crf_test'
+  progdir="$thisdir/.libs"
+
+  if test ! -f "$progdir/$program" || \
+     { file=`ls -1dt "$progdir/$program" "$progdir/../$program" 2>/dev/null | /bin/sed 1q`; \
+       test "X$file" != "X$progdir/$program"; }; then
+
+    file="$$-$program"
+
+    if test ! -d "$progdir"; then
+      mkdir "$progdir"
+    else
+      rm -f "$progdir/$file"
+    fi
+
+    # relink executable if necessary
+    if test -n "$relink_command"; then
+      if relink_command_output=`eval $relink_command 2>&1`; then :
+      else
+	echo "$relink_command_output" >&2
+	rm -f "$progdir/$file"
+	exit 1
+      fi
+    fi
+
+    mv -f "$progdir/$file" "$progdir/$program" 2>/dev/null ||
+    { rm -f "$progdir/$program";
+      mv -f "$progdir/$file" "$progdir/$program"; }
+    rm -f "$progdir/$file"
+  fi
+
+  if test -f "$progdir/$program"; then
+    if test "$libtool_execute_magic" != "%%%MAGIC variable%%%"; then
+      # Run the actual program with our arguments.
+
+      exec $progdir/$program ${1+"$@"}
+
+      $echo "$0: cannot exec $program ${1+"$@"}"
+      exit 1
+    fi
+  else
+    # The program doesn't exist.
+    $echo "$0: error: $progdir/$program does not exist" 1>&2
+    $echo "This script is just a wrapper for $program." 1>&2
+    echo "See the libtool documentation for more information." 1>&2
+    exit 1
+  fi
+fi