Rename

[AntObi]

Pull Request - Rename and Refactor repository

Description

Repository has been renamed from Atomic_Embeddings to ElementEmbeddings. The python code has been refactored to reflect this change.

Type of change

• Breaking change (fix or feature that would cause existing functionality to not work as expected)
• This change requires a documentation update

How Has This Been Tested?

• Re-ran existing test suite
• Locally deployed mkdocs site to check that the documentation works
• Re-ran all notebooks

Test Configuration:

• Python version: 3.9
• Operating System: WSL2-Ubuntu

Checklist:

• My code follows the style guidelines of this project
• I have performed a self-review of my own code
• I have commented my code, particularly in hard-to-understand areas
• I have made corresponding changes to the documentation
• My changes generate no new warnings
• I have added tests that prove my fix is effective or that my feature works
• New and existing unit tests pass locally with my changes
• Any dependent changes have been merged and published in downstream modules
• I have checked my code and corrected any misspellings